yhoogstrate / fastafsLinks
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
☆22Updated last year
Alternatives and similar repositories for fastafs
Users that are interested in fastafs are comparing it to the libraries listed below
Sorting:
- Variant call adjudication☆16Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Updated last month
- sunburst plots for taxonomy - working to update Krona☆44Updated 4 months ago
- A better, faster way to count guides in CRISPR screens.☆34Updated 10 months ago
- Filter of Pairwise Alignement☆44Updated 4 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 2 months ago
- Rust in bioinformatics and computational biology☆19Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- ☆14Updated 2 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Updated 2 years ago
- ☆16Updated last year
- Simulate short-reads datasets using probabilistic models☆11Updated 12 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago