toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
☆22Aug 13, 2024Updated last year
Alternatives and similar repositories for fastafs
Users that are interested in fastafs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 weeks ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- ☆16Oct 29, 2025Updated 4 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- Variant call adjudication☆16Jun 13, 2024Updated last year
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- ☆23May 21, 2025Updated 10 months ago
- ☆14Oct 14, 2020Updated 5 years ago
- ☆15Apr 2, 2025Updated 11 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago
- ☆24Oct 11, 2024Updated last year
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated 2 months ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 4 years ago
- sfasta☆35Feb 25, 2026Updated 3 weeks ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 8 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Mar 11, 2026Updated 2 weeks ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 3 months ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- efficient alignment of strings to partially ordered string graphs☆33Jan 31, 2022Updated 4 years ago