vsbuffalo / snakemake-tutorialLinks
Snakemake tutorial materials
☆19Updated 5 years ago
Alternatives and similar repositories for snakemake-tutorial
Users that are interested in snakemake-tutorial are comparing it to the libraries listed below
Sorting:
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Introduction to Snakemake for Bioinformatics☆21Updated this week
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 4 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- deploy a snakemake pipeline directly from version control (under development)☆25Updated last week
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Flexible omics pipeline☆17Updated 4 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Master of Pores 2☆23Updated 10 months ago
- fastest GTF/GFF-to-BED converter chilling around☆27Updated last month
- Snakemake workflow management system and CLI generation tool☆61Updated 3 months ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- Code for nanopore paper☆33Updated 10 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago