vsbuffalo / snakemake-tutorialLinks
Snakemake tutorial materials
☆19Updated 5 years ago
Alternatives and similar repositories for snakemake-tutorial
Users that are interested in snakemake-tutorial are comparing it to the libraries listed below
Sorting:
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 4 years ago
- Introduction to Snakemake for Bioinformatics☆19Updated this week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 10 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Flexible omics pipeline☆18Updated 2 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- ☆25Updated 6 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆32Updated last month
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 6 years ago
- Master of Pores 2☆23Updated 8 months ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Liftover VCF files☆18Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- deploy a snakemake pipeline directly from version control (under development)☆24Updated last week
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated last week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- LoFreq Version 3☆27Updated 4 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago