vsbuffalo / snakemake-tutorialLinks
Snakemake tutorial materials
☆18Updated 5 years ago
Alternatives and similar repositories for snakemake-tutorial
Users that are interested in snakemake-tutorial are comparing it to the libraries listed below
Sorting:
- Introduction to Snakemake for Bioinformatics☆19Updated last week
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Two locus likelihoods and ARGs under changing population size☆14Updated 2 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated last month
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- Snakemake workflow management system and CLI generation tool☆57Updated last month
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Flexible omics pipeline☆18Updated 3 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 3 weeks ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 9 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆40Updated 7 months ago
- Master of Pores 2☆23Updated 6 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆37Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆21Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago