vsbuffalo / snakemake-tutorial
Snakemake tutorial materials
☆17Updated 4 years ago
Alternatives and similar repositories for snakemake-tutorial:
Users that are interested in snakemake-tutorial are comparing it to the libraries listed below
- Introduction to Snakemake for Bioinformatics☆19Updated this week
- Two locus likelihoods and ARGs under changing population size☆13Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Flexible omics pipeline☆18Updated 5 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 4 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 4 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Adapters for trimming☆30Updated 5 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆35Updated 14 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Liftover VCF files☆17Updated 8 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated 11 months ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Structural variant pipeline☆17Updated 4 years ago
- ☆28Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago