Snakemake tutorial materials
☆19Mar 9, 2020Updated 6 years ago
Alternatives and similar repositories for snakemake-tutorial
Users that are interested in snakemake-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆14Jun 6, 2024Updated 2 years ago
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 4 years ago
- rebuilds and completes models of protein complexes using AlphaFold2☆18May 20, 2026Updated last month
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Mar 22, 2017Updated 9 years ago
- Data and workflow examples☆16Apr 9, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 6 months ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Code that I make for my posts☆13Nov 1, 2022Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- Modular Genome Assembly, Annotation and Assessment Pipeline☆21Mar 16, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Introduction to Snakemake for Bioinformatics☆22Jun 23, 2026Updated last week
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 7 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 8 months ago
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- Python programming workshop for bioinformatics☆10Jul 13, 2021Updated 4 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 5 months ago
- A template for standard compliant snakemake-workflows☆136Mar 27, 2026Updated 3 months ago
- Bioinformatics course (WSBIM1322)☆16Mar 31, 2026Updated 3 months ago
- Increasingly complete example bioinformatics workflow☆18Oct 19, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The Onion Name System - academic literature☆14Sep 1, 2016Updated 9 years ago
- Handy genetics-related R scripts☆32Nov 22, 2019Updated 6 years ago
- A template repository for snakemake workflows.☆43Mar 16, 2026Updated 3 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- A statically generated catalog of available Snakemake workflows☆36Jun 23, 2026Updated last week
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- An example GenBank file reader in Rust☆36Jun 8, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Nov 9, 2016Updated 9 years ago
- RNA-seq workflow using STAR and DESeq2☆367Dec 18, 2025Updated 6 months ago
- Practical Bayesian Inference☆16Aug 7, 2018Updated 7 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated 4 months ago
- ☆20Oct 13, 2014Updated 11 years ago