cement-head / GPU-Bioinformatics
Listing of GPU based bioinformatics software & sites & publications
☆10Updated 2 years ago
Related projects: ⓘ
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆30Updated 3 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆21Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ☆10Updated 12 years ago
- ☆11Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 5 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆16Updated 2 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- FunctionaL Omics Processing platform☆13Updated last month
- Whole Exome/Whole Genome Sequencing alignment pipeline☆26Updated this week
- Automated Detection and Qualification of Differential Methylation☆10Updated 9 months ago
- OPAL: Open-community Profiling Assessment tooL☆26Updated 3 weeks ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆20Updated 3 weeks ago
- Nanopore Real-Time Analysis Tool☆13Updated 2 weeks ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 3 months ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆16Updated 4 years ago
- Teaching modules for Human Genome Variation Lab.☆18Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆23Updated last year
- 🍶 Genome assembly with short sequence reads☆24Updated 7 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆21Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆16Updated 4 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 2 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆27Updated last year
- Bash scripts and data used in pantranscriptomic paper☆21Updated last year
- ☆15Updated 4 months ago
- Split a BAM file by haplotype support☆16Updated 6 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 5 months ago