Alternatives and similar repositories for GPU-Bioinformatics

Users that are interested in GPU-Bioinformatics are comparing it to the libraries listed below

• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆28Updated last week
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated 2 weeks ago
• pachterlab / fastQpick
  ☆27Updated 11 months ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆26Updated last week
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 8 months ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 4 months ago
• BonsonW / slow5curl
  A library and tool for accessing remote BLOW5 files.
  ☆24Updated 3 months ago
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆11Updated 7 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆16Updated 2 years ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆23Updated 2 months ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• kocherlab / pipemake
  A pipeline creation tool using Snakemake
  ☆12Updated last month
• GenomicsAotearoa / RNA-seq-workshop
  ☆19Updated last year
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• guigolab / tmerge
  Merge transcriptome read-to-genome alignments into non-redundant transcript models
  ☆20Updated last year
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆41Updated 4 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated this week
• torkian / blast-QC
  A Quality Control filter and parser for NCBI BLAST XML results.
  ☆17Updated 5 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• KleistLab / NanoPore_dRNASeq
  Codes and results from ONT dRNA benchmarking
  ☆11Updated 2 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last month
• NBISweden / nbis-meta
  A snakemake workflow for metagenomic projects
  ☆15Updated 2 years ago