cement-head / GPU-BioinformaticsLinks
Listing of GPU based bioinformatics software & sites & publications
☆11Updated 4 years ago
Alternatives and similar repositories for GPU-Bioinformatics
Users that are interested in GPU-Bioinformatics are comparing it to the libraries listed below
Sorting:
- A pipeline creation tool using Snakemake☆12Updated last month
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated last month
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Variant catalogue pipeline☆26Updated last week
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- ☆18Updated 8 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 8 months ago
- ☆27Updated 11 months ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- PERF is an Exhaustive Repeat Finder☆33Updated 4 years ago
- Find Unique genomic Regions☆32Updated last week
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Updated 2 months ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated last month
- ☆10Updated 13 years ago
- Master of Pores 2☆23Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last week
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Codes and results from ONT dRNA benchmarking☆11Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆17Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year