Listing of GPU based bioinformatics software & sites & publications
☆12Jan 16, 2022Updated 4 years ago
Alternatives and similar repositories for GPU-Bioinformatics
Users that are interested in GPU-Bioinformatics are comparing it to the libraries listed below
Sorting:
- ☆12Aug 15, 2025Updated 6 months ago
- An HLA star-calling tool for PacBio HiFi data types☆22Feb 26, 2025Updated last year
- TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow☆13Oct 26, 2022Updated 3 years ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- ☆12Sep 27, 2023Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 2 months ago
- A place to put docker build files☆13Oct 3, 2023Updated 2 years ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 3 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- ☆13Sep 5, 2017Updated 8 years ago
- ☆15Apr 10, 2024Updated last year
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated last year
- Template for building your own portfolio☆27Jul 2, 2025Updated 8 months ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆55Oct 9, 2025Updated 4 months ago
- Tumor-normal variant calling workflow using HiFi reads☆27Dec 12, 2025Updated 2 months ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- Clinical Whole Genome and Exome Sequencing Pipeline☆29Oct 27, 2025Updated 4 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Nov 11, 2025Updated 3 months ago
- ☆18Jan 24, 2018Updated 8 years ago
- An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPe…☆31Feb 9, 2026Updated 2 weeks ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- Evaluation of phasing performance☆23Mar 6, 2018Updated 7 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- Example workflows for the Makeflow workflow system.☆34Feb 24, 2025Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Sep 24, 2015Updated 10 years ago
- Calling deletions using deep convolutional neural☆24Feb 12, 2020Updated 6 years ago
- Coding Genome Reconstruction using Iso-Seq data☆61Oct 20, 2021Updated 4 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Sep 26, 2023Updated 2 years ago
- Bioinformatics Open Source Sequence machine☆32Aug 29, 2023Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆40Feb 20, 2026Updated last week
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Nextflow basic tutorial for newbie users☆33Jun 17, 2018Updated 7 years ago
- UTK Bioinformatics Applications☆11Nov 9, 2018Updated 7 years ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Feb 19, 2026Updated last week
- ☆44Updated this week
- A tool for somatic structural variant calling using long reads☆162Oct 20, 2025Updated 4 months ago
- VarDict Java port☆138Jan 5, 2024Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 3 months ago