cement-head / GPU-BioinformaticsLinks
Listing of GPU based bioinformatics software & sites & publications
☆10Updated 3 years ago
Alternatives and similar repositories for GPU-Bioinformatics
Users that are interested in GPU-Bioinformatics are comparing it to the libraries listed below
Sorting:
- A pipeline creation tool using Snakemake☆11Updated 2 weeks ago
- Nanopore Real-Time Analysis Tool☆15Updated 10 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 4 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Rapid and accurate ancestry inference using SNVs.☆19Updated this week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆33Updated last year
- Fast sequencing data quality metrics☆26Updated last month
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 10 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Variant catalogue pipeline☆25Updated 2 months ago
- k-mer similarity analysis pipeline☆21Updated last week
- A Generative Pre-Trained Transformer Package for Pangenomes☆51Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- ☆27Updated 5 months ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- ☆19Updated 8 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Location of public benchmarking; primarily final results☆18Updated 5 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- Master of Pores 2☆23Updated 7 months ago