Listing of GPU based bioinformatics software & sites & publications
☆12Jan 16, 2022Updated 4 years ago
Alternatives and similar repositories for GPU-Bioinformatics
Users that are interested in GPU-Bioinformatics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 15, 2025Updated 7 months ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated last year
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 4 months ago
- TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow☆13Oct 26, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An HLA star-calling tool for PacBio HiFi data types☆23Feb 26, 2025Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆23Mar 27, 2026Updated 2 weeks ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- A sample Slurm Cluster Installation Guide on Debian☆14Mar 2, 2018Updated 8 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Clinical Whole Genome and Exome Sequencing Pipeline☆30Oct 27, 2025Updated 5 months ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 6 months ago
- ☆14Aug 21, 2021Updated 4 years ago
- Course material for the Madrid ASDM class on text mining (C09)☆12Jul 5, 2019Updated 6 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 2 months ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- A place to put docker build files☆13Oct 3, 2023Updated 2 years ago
- ☆15Feb 10, 2025Updated last year
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆10Nov 24, 2025Updated 4 months ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- ☆12Sep 27, 2023Updated 2 years ago
- ☆13Sep 5, 2017Updated 8 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆57Mar 25, 2026Updated 2 weeks ago
- ☆11May 21, 2024Updated last year
- Basically all ingredients for building HPC style clusters are here.☆16Sep 23, 2020Updated 5 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Tumor-normal variant calling workflow using HiFi reads☆29Mar 4, 2026Updated last month
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- An unofficial Beamer template based on the original PPTX UGM Template☆10Feb 19, 2026Updated last month
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year