snakemake-workflows / rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
☆66Updated this week
Alternatives and similar repositories for rna-seq-kallisto-sleuth:
Users that are interested in rna-seq-kallisto-sleuth are comparing it to the libraries listed below
- HMMRATAC peak caller for ATAC-seq data☆100Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆108Updated 2 weeks ago
- Tutorial Website☆56Updated 4 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated last week
- Publication quality NGS track plotting☆111Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated this week
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆56Updated 4 years ago
- A list of alternative splicing analysis resources☆41Updated 3 months ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆27Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆73Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆54Updated 3 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 9 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆43Updated 2 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆105Updated 6 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated 9 months ago
- A Python library to visualize and analyze long-read transcriptomes☆58Updated 11 months ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆62Updated this week
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago