snakemake-workflows / rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
☆68Updated this week
Alternatives and similar repositories for rna-seq-kallisto-sleuth:
Users that are interested in rna-seq-kallisto-sleuth are comparing it to the libraries listed below
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 2 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Publication quality NGS track plotting☆112Updated 2 years ago
- ☆68Updated last year
- ☆30Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆25Updated 2 months ago
- A list of alternative splicing analysis resources☆43Updated 2 weeks ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆47Updated 6 years ago
- Tutorial Website☆57Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- R package containing useful functions for mutational signature analysis☆80Updated last week
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated 3 weeks ago
- ☆48Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆42Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated this week
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago