ArimaGenomics / CHiCLinks
Arima Capture HiC pipeline (Arima-CHiC)
☆11Updated last year
Alternatives and similar repositories for CHiC
Users that are interested in CHiC are comparing it to the libraries listed below
Sorting:
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- ☆36Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ☆25Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- An Optimized Nested TAD caller for Hi-C data☆22Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- single-nucleus nanopore reads processing pipeline☆16Updated last year
- Micro DNA identification☆24Updated 4 years ago
- ☆19Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- ☆23Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆30Updated 8 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- ☆26Updated 3 years ago
- ☆22Updated 2 years ago
- 4C-seq processing pipeline☆24Updated 4 months ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆13Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- ☆36Updated 2 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Updated 5 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- ☆12Updated 6 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆20Updated 5 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated 2 weeks ago