Arima Capture HiC pipeline (Arima-CHiC)
☆12May 16, 2024Updated last year
Alternatives and similar repositories for CHiC
Users that are interested in CHiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jan 20, 2026Updated 2 months ago
- HiC uniform processing pipeline☆63Nov 8, 2023Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆83May 22, 2024Updated last year
- Genomics 3D Visualizer☆14Jun 14, 2024Updated last year
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- an efficient Hi-C data processing pipeline☆17Mar 26, 2024Updated 2 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 3 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Mar 16, 2026Updated last week
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Mar 9, 2023Updated 3 years ago
- An integrated package to process diploid Hi-C data☆17Dec 9, 2021Updated 4 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated 9 months ago
- Documentation for the ISB-CGC on Read the Docs.☆11Jan 20, 2026Updated 2 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Jul 13, 2020Updated 5 years ago
- Docker for 4DN Hi-C processing pipeline☆61Nov 26, 2024Updated last year
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 2 months ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆22Jul 19, 2024Updated last year
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- 4C-seq processing pipeline☆26Mar 17, 2025Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Aug 6, 2024Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆65Nov 14, 2025Updated 4 months ago
- Plant small RNA target prediction tool☆27Dec 19, 2016Updated 9 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆26Apr 16, 2025Updated 11 months ago
- GO KEGG annotation☆39Oct 19, 2022Updated 3 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 3 years ago
- R package for testing and visualizing gene list overlaps☆19Aug 22, 2016Updated 9 years ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆26Feb 23, 2022Updated 4 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Oct 29, 2025Updated 4 months ago
- BS-seq analysis pipeline☆46Mar 28, 2023Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Feb 13, 2026Updated last month
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆30Mar 9, 2026Updated 2 weeks ago
- ☆12Dec 15, 2020Updated 5 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- ☆13Nov 15, 2017Updated 8 years ago