snakemake-workflows / cookiecutter-snakemake-workflowLinks
A cookiecutter template for Snakemake workflows
☆59Updated 3 years ago
Alternatives and similar repositories for cookiecutter-snakemake-workflow
Users that are interested in cookiecutter-snakemake-workflow are comparing it to the libraries listed below
Sorting:
- Monitor computational workflows in real time☆74Updated last year
- Documentation of the Snakemake-Profiles project.☆55Updated 3 years ago
- Reference genome resource manager☆76Updated last year
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- A C library for handling bigWig files☆79Updated 6 months ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 4 months ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated last week
- Config files used to define parameters specific to compute environments at different Institutions☆101Updated this week
- conda recipes for genomic data☆85Updated 3 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 2 months ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- Efficiently read and write sequencing data from Python☆64Updated last month
- A template for standard compliant snakemake-workflows☆104Updated 3 weeks ago
- List of IARC bioinformatics nextflow pipelines☆51Updated 6 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆39Updated last year
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- just annotate it, dammit!☆93Updated last year
- simple comparison of snakemake, nextflow and cromwell/wdl☆49Updated 4 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 3 months ago
- Merging paired-end reads and removing adapters☆44Updated 4 months ago
- Cookiecutter for snakemake slurm profile☆132Updated last year
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- Testing building mulled containers for multi-requirement tools.☆76Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated last week
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Tips for Nextflow and cheatsheet for channel operation☆78Updated 11 months ago
- Documentation of the Snakemake-Workflows project☆156Updated 3 years ago
- A Github action for running a Snakemake workflow☆59Updated last month
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month