Snakemake-Profiles / slurmLinks
Cookiecutter for snakemake slurm profile
☆133Updated last year
Alternatives and similar repositories for slurm
Users that are interested in slurm are comparing it to the libraries listed below
Sorting:
- A template for standard compliant snakemake-workflows☆116Updated 3 months ago
- A simple Snakemake profile for Slurm without --cluster-config☆162Updated last year
- NBIS/Elixir course: Tools for Reproducible Research☆64Updated last week
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- The uncompromising Snakemake code formatter☆180Updated last month
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆98Updated 4 months ago
- This is the development home of the Snakemake wrapper repository, see☆236Updated last week
- A short tutorial on getting started with Snakemake for workflow management☆55Updated 6 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- Testing building mulled containers for multi-requirement tools.☆80Updated last week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆127Updated 5 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated this week
- Sequana: a set of Snakemake NGS pipelines☆148Updated last week
- A C library for handling bigWig files☆81Updated 9 months ago
- Reference genome resource manager☆74Updated last year
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- FASTQ sequence quality visualisation with Emoji☆171Updated 4 months ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated 2 months ago
- Module for embedding igv.js in an IPython notebook☆78Updated 8 months ago
- Example Nextflow pipelines and programming techniques☆106Updated last month
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆119Updated 2 months ago
- Making bioinformatics fun again☆74Updated last week
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Experimental features for Nextflow☆45Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year