Cookiecutter for snakemake slurm profile
☆135Apr 25, 2024Updated 2 years ago
Alternatives and similar repositories for slurm
Users that are interested in slurm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 4 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆166Jun 20, 2024Updated last year
- A template for standard compliant snakemake-workflows☆131Mar 27, 2026Updated last month
- A cookiecutter template for Snakemake workflows☆60Feb 2, 2022Updated 4 years ago
- This is the development home of the Snakemake wrapper repository, see☆243Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Oct 20, 2023Updated 2 years ago
- The uncompromising Snakemake code formatter☆189Updated this week
- Misc. utilities☆11May 21, 2019Updated 6 years ago
- Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.☆63Aug 14, 2025Updated 8 months ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆52Oct 17, 2023Updated 2 years ago
- This is the development home of the workflow management system Snakemake. For general information, see☆2,764Apr 27, 2026Updated last week
- GFF3 format with miRNA and isomiR information from sequencing data☆17Aug 5, 2019Updated 6 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 5 months ago
- Monitor computational workflows in real time☆73May 23, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- RNA-seq workflow using STAR and DESeq2☆357Dec 18, 2025Updated 4 months ago
- A workflow for creating small NGS test data sets, useful for continuous integration.☆24Aug 15, 2024Updated last year
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 7 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 6 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆879Jul 10, 2024Updated last year
- ☆10Dec 29, 2021Updated 4 years ago
- ☆14Jun 3, 2022Updated 3 years ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Nov 15, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- ATAC-seq snakemake pipeline☆90Feb 13, 2020Updated 6 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 2 years ago
- A DRAFT, early stage book on snakemake.☆22Nov 1, 2023Updated 2 years ago
- Send R code/R scripts/shell commands to LSF cluster without leaving R☆27Mar 14, 2025Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆264Jun 8, 2023Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 5 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 20, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tutorial for AMSI BioInfoSummer 2018☆29Dec 3, 2018Updated 7 years ago
- A TUI for monitoring Snakemake workflows in real-time.☆58Mar 13, 2026Updated last month
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 6 months ago
- The command-line interface to GGD☆42Oct 16, 2022Updated 3 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆112Jan 30, 2026Updated 3 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆69Mar 19, 2026Updated last month