Alternatives and similar repositories for slurm

Users that are interested in slurm are comparing it to the libraries listed below

• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆116Updated 3 months ago
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆162Updated last year
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆64Updated last week
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆180Updated last month
• betteridiot / bamnostic
  a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
  ☆98Updated 4 months ago
• snakemake / snakemake-wrappers
  This is the development home of the Snakemake wrapper repository, see
  ☆236Updated last week
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆55Updated 6 years ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated 2 months ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆80Updated last week
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆127Updated 5 years ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆104Updated this week
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆148Updated last week
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated 9 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• fastqe / fastqe
  FASTQ sequence quality visualisation with Emoji
  ☆171Updated 4 months ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆54Updated 3 years ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆107Updated 2 months ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆78Updated 8 months ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated last month
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆119Updated 2 months ago
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated last week
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆80Updated last year
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆45Updated 2 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆152Updated last year