Alternatives and similar repositories for slurm

Users that are interested in slurm are comparing it to the libraries listed below

• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆111Updated 3 weeks ago
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆161Updated last year
• snakemake / snakemake-wrappers
  This is the development home of the Snakemake wrapper repository, see
  ☆232Updated this week
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆176Updated last month
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 4 years ago
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆53Updated 6 years ago
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆168Updated 2 months ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆64Updated last week
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated 3 weeks ago
• betteridiot / bamnostic
  a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
  ☆98Updated 2 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆103Updated this week
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆125Updated 5 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated 3 months ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆78Updated 6 months ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆78Updated 2 months ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆97Updated last year
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 8 months ago
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆81Updated 2 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• Boehringer-Ingelheim / dso
  Data Science Operations (dso) command line tool
  ☆41Updated last week
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆121Updated this week
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 2 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆152Updated last year
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆138Updated this week
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆54Updated 3 years ago