Snakemake-Profiles / slurmLinks
Cookiecutter for snakemake slurm profile
☆132Updated last year
Alternatives and similar repositories for slurm
Users that are interested in slurm are comparing it to the libraries listed below
Sorting:
- A template for standard compliant snakemake-workflows☆111Updated last month
- A simple Snakemake profile for Slurm without --cluster-config☆161Updated last year
- NBIS/Elixir course: Tools for Reproducible Research☆63Updated this week
- This is the development home of the Snakemake wrapper repository, see☆230Updated this week
- The uncompromising Snakemake code formatter☆175Updated 2 weeks ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 4 years ago
- Simple test framework for Nextflow pipelines☆169Updated 3 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆125Updated 5 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Reference genome resource manager☆74Updated last year
- A C library for handling bigWig files☆81Updated 8 months ago
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆98Updated 2 months ago
- A short tutorial on getting started with Snakemake for workflow management☆54Updated 6 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated last month
- Example Nextflow pipelines and programming techniques☆106Updated 4 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Testing building mulled containers for multi-requirement tools.☆78Updated this week
- Sequana: a set of Snakemake NGS pipelines☆145Updated last month
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆103Updated last week
- FASTQ sequence quality visualisation with Emoji☆171Updated 3 months ago
- machine-readable file format for genomic library sequence and structure☆121Updated last week
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆97Updated last year
- Module for embedding igv.js in an IPython notebook☆78Updated 7 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Data Science Operations (dso) command line tool☆43Updated last week
- Experimental features for Nextflow☆44Updated 3 weeks ago
- Match up paired end fastq files quickly and efficiently.☆151Updated last year