Snakemake-Profiles / slurmLinks
Cookiecutter for snakemake slurm profile
☆134Updated last year
Alternatives and similar repositories for slurm
Users that are interested in slurm are comparing it to the libraries listed below
Sorting:
- A template for standard compliant snakemake-workflows☆122Updated last week
- A simple Snakemake profile for Slurm without --cluster-config☆165Updated last year
- A short tutorial on getting started with Snakemake for workflow management☆57Updated 6 years ago
- NBIS/Elixir course: Tools for Reproducible Research☆67Updated last week
- Demonstrating best practices for bioinformatics command line tools☆117Updated 5 years ago
- This is the development home of the Snakemake wrapper repository, see☆239Updated last week
- Simple test framework for Nextflow pipelines☆174Updated last week
- The uncompromising Snakemake code formatter☆182Updated last week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆93Updated 5 months ago
- Extension for Jupyter which integrates igv.js☆154Updated 3 years ago
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆98Updated 7 months ago
- FASTQ sequence quality visualisation with Emoji☆170Updated last month
- Config files used to define parameters specific to compute environments at different Institutions☆107Updated this week
- Testing building mulled containers for multi-requirement tools.☆83Updated this week
- Turn an existing conda environment into a Singularity container☆82Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Example Nextflow pipelines and programming techniques☆106Updated 4 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆129Updated 5 years ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Sequana: a set of Snakemake NGS pipelines☆151Updated last week
- Reference genome resource manager☆74Updated last month
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 5 months ago
- machine-readable file format for genomic library sequence and structure☆126Updated 4 months ago
- Module for embedding igv.js in an IPython notebook☆80Updated 11 months ago
- Merging paired-end reads and removing adapters☆46Updated 2 months ago
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- A C library for handling bigWig files☆81Updated last year
- Genomic interval operations on Pandas DataFrames☆186Updated 3 weeks ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year