Snakemake-Profiles / slurm
Cookiecutter for snakemake slurm profile
☆123Updated 4 months ago
Related projects: ⓘ
- A template for standard compliant snakemake-workflows☆86Updated last year
- A simple Snakemake profile for Slurm without --cluster-config☆130Updated 3 months ago
- The uncompromising Snakemake code formatter☆147Updated 2 months ago
- NBIS/ELIXIR course: Tools for Reproducible Research☆55Updated this week
- A cookiecutter template for Snakemake workflows☆57Updated 2 years ago
- Example Nextflow pipelines and programming techniques☆97Updated 3 weeks ago
- A short tutorial on getting started with Snakemake for workflow management☆46Updated 5 years ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 3 years ago
- machine-readable file format for genomic library sequence and structure☆109Updated this week
- Module for embedding igv.js in an IPython notebook☆61Updated 11 months ago
- This is the development home of the Snakemake wrapper repository, see☆213Updated this week
- Testing building mulled containers for multi-requirement tools.☆69Updated this week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆120Updated 4 years ago
- A C library for handling bigWig files☆73Updated 2 years ago
- Merging paired-end reads and removing adapters☆44Updated 4 years ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆89Updated this week
- Snakemake profile for running jobs on an LSF cluster☆36Updated last month
- Turn an existing conda environment into a Singularity container☆74Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.☆86Updated 2 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆90Updated last week
- Extension for Jupyter which integrates igv.js☆154Updated last year
- Example genomics data for tool developers☆93Updated 2 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆104Updated 4 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆88Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆94Updated this week
- Sequana: a set of Snakemake NGS pipelines☆142Updated 2 weeks ago
- A collection of reusable WDL tasks. Category:Other☆85Updated 3 weeks ago
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆95Updated last year
- Simple test framework for Nextflow pipelines☆136Updated 2 weeks ago
- Reference genome resource manager☆74Updated 9 months ago