snakemake / snakemake-lang-vscode-pluginLinks
Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.
☆22Updated 2 months ago
Alternatives and similar repositories for snakemake-lang-vscode-plugin
Users that are interested in snakemake-lang-vscode-plugin are comparing it to the libraries listed below
Sorting:
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated last year
- Seamlessly integrate R packages into Python.☆21Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- K-mer Counting for Biological Sequence Analysis☆27Updated 6 years ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Updated 3 weeks ago
- Muller diagrams excel at visualizing evolutionary dynamics of a population over time. A common use case, and the intended use case durin…☆13Updated 5 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Updated 3 weeks ago
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 3 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Calculate and plot distributions of genomic ranges☆27Updated 8 months ago
- The snakemake interface, currently works like a notebook (under development)☆21Updated 3 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Updated 11 months ago
- Read RDS files, in Python☆25Updated last week
- A statically generated catalog of available Snakemake workflows☆36Updated last week
- Container class to represent genomic locations and support genomic analysis☆27Updated last week
- a minimal, scriptable genome browser for python☆53Updated last year
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆45Updated this week
- A Github action for running a Snakemake workflow☆62Updated last week
- interactive plots for differential expression analysis☆34Updated 6 months ago
- Differential expression and allelic analysis, nonparametric statistics☆30Updated 11 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- R interface to genome annotation files and the UCSC genome browser☆35Updated last week
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 9 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆21Updated 8 years ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- Turn an existing conda environment into a Singularity container☆82Updated 3 years ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆14Updated 3 years ago