Alternatives and similar repositories for snakemake-lang-vscode-plugin

Users that are interested in snakemake-lang-vscode-plugin are comparing it to the libraries listed below

• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆59Updated last month
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated 4 months ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆19Updated 3 years ago
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆35Updated this week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• carpentries-incubator / workflows-nextflow
  Workflow management with Nextflow and nf-core
  ☆25Updated 5 months ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆54Updated last month
• ncbi / graf
  Genetic Relationship And Fingerprinting
  ☆15Updated 2 years ago
• ncbi / docker
  ☆54Updated 2 months ago
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆28Updated last year
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆31Updated 2 years ago
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated 11 months ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆104Updated 3 weeks ago
• YaCui / NG-Circos
  ☆31Updated 4 years ago
• FredHutch / workflow-template-nextflow
  Template for building a small workflow in Nextflow
  ☆17Updated 3 years ago
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆86Updated 2 weeks ago
• ialbert / bio
  Making bioinformatics fun again
  ☆73Updated last month
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆110Updated 3 weeks ago
• Roleren / ORFik
  ☆34Updated this week
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆44Updated this week
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 8 months ago
• riboviz / riboviz
  Analysis and Visualization of Ribosome Profiling Data
  ☆31Updated 2 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated last month
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆102Updated this week
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆113Updated 7 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last month
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆43Updated 2 years ago