Alternatives and similar repositories for snakemake-lang-vscode-plugin

Users that are interested in snakemake-lang-vscode-plugin are comparing it to the libraries listed below

• kpj / rwrap
  Seamlessly integrate R packages into Python.
  ☆21Updated 2 years ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆20Updated 3 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆60Updated 4 months ago
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 6 years ago
• Roleren / ORFik
  ☆34Updated last week
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆20Updated 4 years ago
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆81Updated 2 years ago
• carpentries-incubator / workflows-nextflow
  Workflow management with Nextflow and nf-core
  ☆26Updated 9 months ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆42Updated this week
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆25Updated 2 weeks ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 8 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated 2 weeks ago
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated 4 months ago
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆38Updated last year
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 3 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated 3 weeks ago
• brianyiktaktsui / Skymap
  High-throughput gene to knowledge mapping through massive integration of public sequencing data.
  ☆31Updated 6 years ago
• cademirch / snkmt
  A TUI for monitoring Snakemake workflows in real-time.
  ☆35Updated 2 weeks ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆39Updated 10 months ago
• cdeitrick / Lolipop
  Muller diagrams excel at visualizing evolutionary dynamics of a population over time. A common use case, and the intended use case durin…
  ☆13Updated 5 years ago
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆32Updated last week
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
  ☆14Updated last month
• G3viz / g3viz
  Lollipop-diagram to interactively visualize genetic mutations
  ☆33Updated last year
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• nf-core / proteomicslfq
  Proteomics label-free quantification (LFQ) analysis pipeline
  ☆36Updated 9 months ago
• markziemann / dee2
  Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
  ☆42Updated last week
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 2 weeks ago