Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.
☆25May 21, 2026Updated 5 months ago
Alternatives and similar repositories for snakemake-lang-vscode-plugin
Users that are interested in snakemake-lang-vscode-plugin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- deploy a snakemake pipeline directly from version control (under development)☆28Updated this week
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 7 months ago
- An awesome tool to visualize snakemake rule graphs☆46May 2, 2026Updated 6 months ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Updated this week
- A TUI for monitoring Snakemake workflows in real-time.☆71Oct 9, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆56Sep 28, 2026Updated last month
- A easy-to-use Python API for Primer3 primer design.☆17Nov 10, 2022Updated 3 years ago
- eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis☆12Mar 23, 2024Updated 2 years ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 3 years ago
- Manim animations for Youtube and teaching☆11Mar 11, 2025Updated last year
- A workflow for creating small NGS test data sets, useful for continuous integration.☆23Aug 15, 2024Updated 2 years ago
- R package: translate R to cron to English☆12Nov 27, 2021Updated 4 years ago
- Adaptive builder for formatted strings☆17Oct 30, 2015Updated 11 years ago
- Documentation of the Snakemake-Profiles project.☆54Mar 15, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code and analysis for the 1000 tools paper☆11Nov 12, 2021Updated 4 years ago
- next gen ADAP☆12Jan 28, 2020Updated 6 years ago
- A Firefox add-on that warns about changing certificates☆13Dec 1, 2019Updated 6 years ago
- ☆11Apr 24, 2023Updated 3 years ago
- Source code of Statistical Computing 2 website☆12Feb 6, 2023Updated 3 years ago
- This is the development home of the workflow management system Snakemake. For general information, see☆2,894Updated this week
- Interactive box plot for clinical trial analysis☆14Aug 28, 2026Updated 2 months ago
- convert bash/r/python history or unstructured code in snakefiles☆12Jul 15, 2026Updated 3 months ago
- Mini installer that contains everything that's necessary to run rhumba☆14May 18, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Content for https://slides.dornea.nu☆12Jan 17, 2024Updated 2 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 6 years ago
- command-line optional and positional argument parser☆109Updated this week
- Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and …☆12Jan 12, 2023Updated 3 years ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- An extension for Emacs Agent Shell to render math equations☆20Updated this week
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Tools for Writing GitHub Apps in R☆20Oct 3, 2024Updated 2 years ago
- A template for standard compliant snakemake-workflows☆139Mar 27, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Aug 29, 2025Updated last year
- ☆10Jan 20, 2026Updated 9 months ago
- Power/Precision Analysis to Determine Minimum Sample Size and Effect☆10Jun 24, 2022Updated 4 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 8 years ago
- ☆13Jan 31, 2015Updated 11 years ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- Rust crate for Quadbin spatial indexing☆10Mar 3, 2026Updated 7 months ago