Alternatives and similar repositories for snakemake-lang-vscode-plugin

Users that are interested in snakemake-lang-vscode-plugin are comparing it to the libraries listed below

• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆59Updated last month
• ialbert / bio
  Making bioinformatics fun again
  ☆75Updated 2 months ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆52Updated 7 years ago
• brianyiktaktsui / Skymap
  High-throughput gene to knowledge mapping through massive integration of public sequencing data.
  ☆31Updated 6 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated last month
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 7 months ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆53Updated last month
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• nf-core / proteomicslfq
  Proteomics label-free quantification (LFQ) analysis pipeline
  ☆35Updated 6 months ago
• Roleren / ORFik
  ☆34Updated this week
• FredHutch / workflow-template-nextflow
  Template for building a small workflow in Nextflow
  ☆17Updated 3 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆43Updated 2 years ago
• databio / GenomicDistributions
  Calculate and plot distributions of genomic ranges
  ☆26Updated 3 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated 2 months ago
• kpj / rwrap
  Seamlessly integrate R packages into Python.
  ☆21Updated 2 years ago
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆20Updated 4 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 3 weeks ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆40Updated 2 weeks ago
• carpentries-incubator / workflows-nextflow
  Workflow management with Nextflow and nf-core
  ☆24Updated 6 months ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆22Updated last week
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 5 years ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated 3 weeks ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆111Updated last week
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆71Updated 4 months ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆59Updated 2 weeks ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆57Updated 3 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆45Updated 4 months ago