Alternatives and similar repositories for snakemake-executor-plugin-slurm

Users that are interested in snakemake-executor-plugin-slurm are comparing it to the libraries listed below

• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆59Updated last month
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 7 months ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆37Updated 2 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆133Updated last year
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆160Updated last year
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• COMBINE-lab / pyroe
  ☆16Updated 7 months ago
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆174Updated 2 weeks ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆61Updated 2 weeks ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 11 months ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆107Updated last week
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆39Updated 8 months ago
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆22Updated 5 months ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆59Updated last month
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated last week
• snakemake / snakemake-lang-vscode-plugin
  Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.
  ☆20Updated last month
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• sgkit-dev / vcztools
  Partial reimplementation of bcftools for VCF Zarr
  ☆16Updated last month
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 3 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated 2 months ago
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆32Updated last month
• pepkit / pepspec
  Documentation for PEP specification and all PEPkit software
  ☆10Updated 3 weeks ago
• beardymcjohnface / Snaketool
  Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
  ☆51Updated last year
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆65Updated 2 months ago
• seqeralabs / tower-cli
  Nextflow Tower CLI tool
  ☆50Updated last week
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated last week
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆19Updated this week
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 11 months ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆111Updated last week