A Snakemake executor plugin for submitting jobs to a SLURM cluster
☆56Sep 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for snakemake-executor-plugin-slurm
Users that are interested in snakemake-executor-plugin-slurm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A TUI for monitoring Snakemake workflows in real-time.☆71Updated this week
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 3 years ago
- Callable Loci... and more☆24Apr 8, 2026Updated 6 months ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆51Oct 17, 2023Updated 2 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆96Oct 1, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆23Updated this week
- [MIRROR] Emacs support for Snakemake☆35Feb 4, 2025Updated last year
- An awesome tool to visualize snakemake rule graphs☆45May 2, 2026Updated 5 months ago
- Exact diagonalization of model Hamiltonians☆10Apr 5, 2019Updated 7 years ago
- ☆16Mar 20, 2023Updated 3 years ago
- CSV IO: Read and write delimited text files with support of decimal comma, Date/Time types, Complex and Rational numbers.☆12Feb 15, 2022Updated 4 years ago
- A template for standard compliant snakemake-workflows☆138Mar 27, 2026Updated 6 months ago
- The uncompromising Snakemake code formatter☆196Sep 9, 2026Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆33Aug 21, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Dec 22, 2025Updated 9 months ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Sep 10, 2026Updated last month
- Modular Breeding Program Simulator☆46Oct 5, 2026Updated last week
- Identification of structural variations☆12Jul 22, 2022Updated 4 years ago
- Monitor computational workflows in real time☆76Aug 14, 2026Updated last month
- ☆36Nov 4, 2025Updated 11 months ago
- simulate sequence data and complicated pedigree structures☆16Apr 5, 2023Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆33Updated this week
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12May 12, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 7 months ago
- zero-inflated negative binomial gene expression in R☆21Jan 31, 2018Updated 8 years ago
- deploy a snakemake pipeline directly from version control (under development)☆28Sep 28, 2026Updated 2 weeks ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆22Updated this week
- Source code of Statistical Computing 2 website☆12Feb 6, 2023Updated 3 years ago
- Content for https://slides.dornea.nu☆12Jan 17, 2024Updated 2 years ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a simple read-only sequence database, designed for short reads☆66Apr 25, 2026Updated 5 months ago
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated last month
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- Vocabulary Maintenance Specification Task Group + SDS + VMS☆13Apr 1, 2026Updated 6 months ago
- Cookiecutter for snakemake slurm profile☆136Apr 25, 2024Updated 2 years ago
- Failsafe value retrieval, modification and utils using json-pointer spec☆14May 8, 2026Updated 5 months ago
- A Sphinx extension to automatically document argparse commands and options☆38Aug 28, 2026Updated last month