snakemake / snakemake-executor-plugin-slurmLinks
A Snakemake executor plugin for submitting jobs to a SLURM cluster
☆45Updated last week
Alternatives and similar repositories for snakemake-executor-plugin-slurm
Users that are interested in snakemake-executor-plugin-slurm are comparing it to the libraries listed below
Sorting:
- A Github action for running a Snakemake workflow☆62Updated 2 weeks ago
- Monitor computational workflows in real time☆74Updated last year
- Convert bioinformatics file formats to Zarr☆42Updated 7 months ago
- A TUI for monitoring Snakemake workflows in real-time.☆46Updated last week
- a minimal, scriptable genome browser for python☆53Updated last year
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- Snakemake workflow management system and CLI generation tool☆63Updated 2 months ago
- Cookiecutter for snakemake slurm profile☆134Updated last year
- vembrane filters VCF records using python expressions☆67Updated 2 weeks ago
- A command line utilty for working with BINSEQ files☆32Updated 2 weeks ago
- A high efficiency binary format for sequencing data☆84Updated last week
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆53Updated 2 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆165Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆24Updated last month
- Partial reimplementation of bcftools for VCF Zarr☆19Updated last week
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- An efficient CLI to extract sequences from the SRA☆118Updated last month
- Modular job submitter for arbitrary pipelines or commands.☆24Updated last month
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆29Updated last week
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- A template for standard compliant snakemake-workflows☆120Updated 2 months ago
- Nextflow language support for Visual Studio Editor☆35Updated 3 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- A high-performance BigWig and BigBed library in Rust☆110Updated 2 months ago
- Efficiently read and write sequencing data from Python☆69Updated 2 months ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Updated last year