beardymcjohnface / Nektool
Cookiecutter profile for making a NextFlow-based bioinformatics tool
☆16Updated 8 months ago
Alternatives and similar repositories for Nektool:
Users that are interested in Nektool are comparing it to the libraries listed below
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated 11 months ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated this week
- k-mer similarity analysis pipeline☆20Updated last month
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆46Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 2 months ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 2 months ago
- Customer workshop materials☆17Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆12Updated last year
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 5 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- FunctionaL Omics Processing platform☆13Updated 7 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 6 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- ☆22Updated 3 months ago
- ☆16Updated last year
- Build and maintain multiple custom conda environments all in one place.☆37Updated 3 months ago
- Automatically source dotenv files into your Nextflow scope☆9Updated this week
- kProcessor: kmers processing framework.☆11Updated last year
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 5 months ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Differential expression and allelic analysis, nonparametric statistics☆28Updated 2 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.