Alternatives and similar repositories for snakedeploy:

Users that are interested in snakedeploy are comparing it to the libraries listed below

• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 3 years ago
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆32Updated this week
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆19Updated 2 years ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆16Updated this week
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• ncbi / sars2variantcalling
  The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…
  ☆12Updated last year
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated last year
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆20Updated this week
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆29Updated 2 years ago
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆25Updated 8 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆58Updated last month
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆44Updated 6 months ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated last year
• pyranges / pyranges_1.x
  PyRanges as a DataFrame subclass.
  ☆14Updated 3 weeks ago
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆26Updated 2 weeks ago
• yachielab / FRACTAL
  FRACTAL: framework for distributed computing to trace large accurate lineages
  ☆24Updated 2 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆17Updated 2 weeks ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 9 years ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆50Updated last month
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated last year
• ncbi / magicblast
  ☆35Updated last year
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆52Updated 4 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆20Updated this week
• UMCUGenetics / NextflowModules
  UMCU Genetics Nextflow modules
  ☆27Updated 2 months ago
• openwdl / workflow-template-wdl
  ☆9Updated 2 months ago