snakemake / snakedeployLinks
deploy a snakemake pipeline directly from version control (under development)
☆24Updated 4 months ago
Alternatives and similar repositories for snakedeploy
Users that are interested in snakedeploy are comparing it to the libraries listed below
Sorting:
- The snakemake interface, currently works like a notebook (under development)☆19Updated 3 years ago
- A Github action for running a Snakemake workflow☆59Updated last month
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- A statically generated catalog of available Snakemake workflows☆35Updated last week
- ☆37Updated 2 months ago
- Monitor computational workflows in real time☆74Updated last year
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆34Updated 3 years ago
- Fast sequencing data quality metrics☆26Updated last month
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆45Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆15Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated 3 weeks ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- vembrane filters VCF records using python expressions☆61Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆44Updated last week
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 4 months ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Hitting associations with k-mers☆45Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 3 weeks ago