deploy a snakemake pipeline directly from version control (under development)
☆27Jun 18, 2026Updated 3 months ago
Alternatives and similar repositories for snakedeploy
Users that are interested in snakedeploy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A software toolkit for the interconversion of standard data models for phenotypic data☆18Updated this week
- A Github action for running a Snakemake workflow☆64Apr 24, 2026Updated 4 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆16Jul 10, 2026Updated 2 months ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- ☆13Dec 1, 2021Updated 4 years ago
- ☆15May 22, 2026Updated 3 months ago
- Documentation and tutorials on using AWS for biomedical research☆18Jun 10, 2026Updated 3 months ago
- An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.☆17Dec 21, 2024Updated last year
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆16Jan 16, 2024Updated 2 years ago
- protobuf-pydantic-gen is a Python code generator that turns Protocol Buffer schemas into Pydantic and SQLModel models. It keeps protobuf …☆19Jul 26, 2026Updated last month
- Introduction to Cloud Computing for Genomics☆21Updated this week
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool to facilitate comparative visualisation of CLIP data☆18Nov 29, 2023Updated 2 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆167Jun 20, 2024Updated 2 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Mar 20, 2026Updated 6 months ago
- A template for standard compliant snakemake-workflows☆138Mar 27, 2026Updated 5 months ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Oct 12, 2023Updated 2 years ago
- A command-line interface for Sentieon pipelines☆16Sep 13, 2026Updated last week
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Clinical Whole Genome and Exome Sequencing Pipeline☆31Aug 26, 2026Updated 3 weeks ago
- This is the development home of the Snakemake wrapper repository, see☆255Updated this week
- hail-based pipelines for annotating variant callsets and exporting them to clickhouse☆23Aug 6, 2026Updated last month
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆26Jul 28, 2026Updated last month
- Repository for the family history/pedigree project☆13Aug 26, 2026Updated 3 weeks ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Model files for Sentieon variant callers☆17Jul 23, 2026Updated last month
- An awesome tool to visualize snakemake rule graphs☆40May 2, 2026Updated 4 months ago
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Ultra-fast 5' and 3' demultiplexer☆31Apr 23, 2024Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated last week
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆39Jul 10, 2024Updated 2 years ago
- A serverless implementation of the FHIR standard that enables users to focus more on their business needs/uniqueness rather than the FHIR…☆39Jan 31, 2024Updated 2 years ago
- Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.☆25May 21, 2026Updated 3 months ago
- Monitor computational workflows in real time☆76Aug 14, 2026Updated last month