Alternatives and similar repositories for snakemake-workflow-catalog

Users that are interested in snakemake-workflow-catalog are comparing it to the libraries listed below

• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated 4 months ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆59Updated last month
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆39Updated 7 months ago
• ncbi / magicblast
  ☆37Updated 2 months ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆19Updated 3 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆34Updated 3 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆31Updated 2 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 4 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• beardymcjohnface / Snaketool
  Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
  ☆51Updated last year
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆20Updated last year
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• MHH-RCUG / Wochenende
  Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
  ☆37Updated 2 years ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆32Updated 3 years ago
• ncbi / sars2variantcalling
  The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…
  ☆15Updated 2 years ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆63Updated last month
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated last month
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆34Updated last year
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆29Updated 6 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆43Updated 2 years ago
• vsbuffalo / snakemake-tutorial
  Snakemake tutorial materials
  ☆19Updated 5 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 4 years ago