snakemake / snakemake-workflow-catalog

Related projects: ⓘ

• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆19Updated 4 months ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆17Updated 2 years ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆51Updated last year
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated last year
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆32Updated 3 years ago
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆26Updated 4 months ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆36Updated last year
• beardymcjohnface / Snaketool
  Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
  ☆42Updated 11 months ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆27Updated 3 weeks ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆14Updated 5 months ago
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆16Updated 3 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆19Updated 2 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆12Updated last month
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated last year
• mskcc / facets2n
  Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…
  ☆11Updated last year
• mklarqvist / tomahawk
  Fast calculations of linkage-disequilibrium in large-scale human cohorts
  ☆41Updated 4 years ago
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆17Updated this week
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 2 months ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated this week
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆25Updated 2 years ago
• ncbi / graf
  Genetic Relationship And Fingerprinting
  ☆13Updated last year
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 3 years ago
• KarchinLab / SCHISM
  Subclonal Hierarchy Inference from Somatic Mutations
  ☆21Updated 5 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 5 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated last year
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated last year
• cran / chromoMap
   This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data
  ☆8Updated 2 years ago
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆19Updated 3 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated last month