snakemake / snakemake-workflow-catalogLinks
A statically generated catalog of available Snakemake workflows
☆36Updated this week
Alternatives and similar repositories for snakemake-workflow-catalog
Users that are interested in snakemake-workflow-catalog are comparing it to the libraries listed below
Sorting:
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆53Updated 2 years ago
- deploy a snakemake pipeline directly from version control (under development)☆24Updated last month
- A Github action for running a Snakemake workflow☆62Updated last month
- The command-line interface to GGD☆43Updated 3 years ago
- Snakemake workflow management system and CLI generation tool☆63Updated 2 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆42Updated 2 weeks ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Updated last year
- Demonstrating best practices for bioinformatics command line tools☆25Updated 5 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Updated last year
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28Updated 8 months ago
- Modular job submitter for arbitrary pipelines or commands.☆24Updated 2 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 months ago
- Python bindings for the TaxonKit library☆42Updated this week
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆25Updated this week
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 2 months ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- A python package and a set of shell commands to handle GTF files☆50Updated last month
- ☆13Updated 8 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Updated last month
- Build and maintain multiple custom conda environments all in one place.☆40Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago