dyxstat / HiCBinLinks
HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
☆14Updated 2 years ago
Alternatives and similar repositories for HiCBin
Users that are interested in HiCBin are comparing it to the libraries listed below
Sorting:
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- ☆21Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆38Updated 3 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Updated 6 months ago
- Hierarchical clustering of cgMLST☆12Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 7 months ago
- An algorithm for clustering metagenomic sequences.☆39Updated last week
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- For computational analysis of bacterial RNA-seq data☆11Updated 8 years ago
- Tool for unsupervised contig binning from viral metagenomes☆17Updated 4 years ago
- ☆61Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆24Updated 5 months ago
- Quality control plotting for long reads☆10Updated last year
- Graph-based assembly phasing☆90Updated 3 weeks ago
- Strain Resolution ON Graphs☆49Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- ☆33Updated 2 years ago
- Bacterial GWAS analysis☆46Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago