dyxstat / HiCBinLinks
HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
☆14Updated 2 years ago
Alternatives and similar repositories for HiCBin
Users that are interested in HiCBin are comparing it to the libraries listed below
Sorting:
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- ☆21Updated 5 years ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 4 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated last week
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Hierarchical clustering of cgMLST☆11Updated last year
- Tool for unsupervised contig binning from viral metagenomes☆17Updated 3 years ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆16Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated last year
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆21Updated 3 months ago
- An algorithm for clustering metagenomic sequences.☆37Updated 5 months ago
- ☆58Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆31Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- ☆34Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆24Updated 3 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Automatic evaluation of HGTs☆30Updated 7 months ago
- Discover and annotate the virome☆51Updated 3 weeks ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago