dyxstat / HiCBin
HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
☆14Updated last year
Alternatives and similar repositories for HiCBin:
Users that are interested in HiCBin are comparing it to the libraries listed below
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 10 months ago
- Prophage Activity Estimator☆26Updated 10 months ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆16Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 6 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆17Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- KEGG Module Evaluation Tool☆29Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated 2 months ago
- ☆15Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆34Updated 6 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- ☆31Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 2 weeks ago
- Hierarchical clustering of cgMLST☆11Updated last year
- viralFlye pipeline☆18Updated 8 months ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 7 months ago
- Virus Protein Family tools☆29Updated 2 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 2 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- Population genomics from metagenomes☆11Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- ☆25Updated last year