Wytamma / snkLinks
Snakemake workflow management system and CLI generation tool
☆59Updated 2 months ago
Alternatives and similar repositories for snk
Users that are interested in snk are comparing it to the libraries listed below
Sorting:
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆51Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated this week
- An efficient CLI to extract sequences from the SRA☆111Updated last week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month
- Creating alignment plots from bam files☆65Updated last week
- expressions on VCFs☆85Updated 3 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 6 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- gia: Genomic Interval Arithmetic☆65Updated 11 months ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆48Updated this week
- Efficient calculation of phylogenetic distance matrices.☆48Updated 10 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 4 months ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated 2 months ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated last year
- SARS-CoV-2 workflow for nanopore sequence data☆41Updated last week
- vembrane filters VCF records using python expressions☆61Updated last week
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆44Updated this week
- Simple bacterial assembly and annotation pipeline☆75Updated last week
- Nail is an Alignment Inference tooL☆50Updated this week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆61Updated 11 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- ☆42Updated 2 weeks ago
- Scalable creating/updating of metagenome profiling databases☆61Updated last month
- tree visualization for tree + annotation data☆39Updated last month