Wytamma / snk
Snakemake workflow management system and CLI generation tool
☆50Updated last month
Alternatives and similar repositories for snk:
Users that are interested in snk are comparing it to the libraries listed below
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 5 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆33Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆58Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆32Updated 3 weeks ago
- Creating alignment plots from bam files☆56Updated this week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆58Updated 4 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆27Updated 3 weeks ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 5 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 2 months ago
- Python bindings for the TaxonKit library☆33Updated 2 weeks ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆45Updated last year
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆52Updated 2 weeks ago
- distance based phylogenetic placement☆26Updated 10 months ago
- Split k-mer analysis – version 2☆73Updated this week
- Efficient calculation of phylogenetic distance matrices.☆45Updated 3 months ago
- Kraken2 Server☆21Updated 11 months ago
- gia: Genomic Interval Arithmetic☆58Updated 4 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆28Updated last month
- A Generative Pre-Trained Transformer Package for Pangenomes☆50Updated 8 months ago
- expressions on VCFs☆66Updated 3 months ago
- ☆28Updated last month
- Remove human reads from a sequencing run☆35Updated 3 months ago
- Nail is an Alignment Inference tooL☆43Updated this week
- crab go snap snap☆35Updated last month
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated this week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆31Updated 6 months ago