Gregor-Mendel-Institute / bookendLinks
End-guided RNA assembler
☆15Updated last week
Alternatives and similar repositories for bookend
Users that are interested in bookend are comparing it to the libraries listed below
Sorting:
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- ☆20Updated 3 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- ☆23Updated 4 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 3 weeks ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- ☆17Updated last year
- Analyse RNA feature distributions.☆17Updated 11 months ago
- ☆24Updated 11 months ago
- Enabling differential allele-specific analysis☆11Updated 11 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 11 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 6 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ☆34Updated 3 weeks ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- Telomerecat: The telomere computational analysis tool☆21Updated 4 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- ☆10Updated 4 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 8 months ago
- ☆38Updated 2 years ago