☆17Aug 3, 2026Updated 3 weeks ago
Alternatives and similar repositories for phasius
Users that are interested in phasius are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Aug 3, 2026Updated 3 weeks ago
- ☆20Nov 17, 2025Updated 9 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Aug 5, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆23Jan 23, 2026Updated 7 months ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆189Aug 17, 2026Updated last week
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 3 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 5 months ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 3 months ago
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 5 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆86Aug 20, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Splitting of sequence reads by internal adapter sequence search☆51May 30, 2023Updated 3 years ago
- ☆20May 8, 2026Updated 3 months ago
- ☆29Aug 15, 2026Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- A multiscale pangenome browser☆33Jul 18, 2026Updated last month
- A long-read somatic phasing software for tumor-only sequencing☆15Aug 17, 2026Updated last week
- Whole genome visualization and comparative genomics in R☆25Feb 18, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- Basecalling configuration prediction through FASTQ files☆34Mar 17, 2026Updated 5 months ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆37Jun 22, 2026Updated 2 months ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Nov 3, 2023Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆24Jul 30, 2026Updated last month
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- quality filtering tool for long reads☆413Sep 17, 2025Updated 11 months ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Tutorials for the crisprVerse☆16Feb 10, 2025Updated last year
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago