Alternatives and similar repositories for phasius

Users that are interested in phasius are comparing it to the libraries listed below

• wdecoster / kyber
  ☆21Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 9 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated 3 weeks ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated 2 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆32Updated 4 years ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆40Updated 4 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated last year
• pierrepeterlongo / back_to_sequences
  ☆46Updated 2 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• SR-Martin / alvis
  ☆20Updated 2 years ago
• maxgmarin / panqc
  A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses
  ☆21Updated last month
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆25Updated 5 years ago
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆40Updated last month
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 5 years ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆44Updated last year
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆45Updated last year
• sanger-tol / PretextMap
  Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
  ☆24Updated last week
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated 2 years ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆23Updated 2 months ago
• at-cg / RAFT
  Improved long-read assembly by preserving contained reads
  ☆30Updated last year
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• maojanlin / biastools
  Reference bias measuring toolkit
  ☆20Updated 9 months ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆39Updated 4 months ago
• OmarOakheart / nPhase
  Ploidy agnostic phasing pipeline and algorithm
  ☆49Updated 2 years ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆80Updated last month
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆63Updated 9 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 4 years ago