A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
☆90May 3, 2026Updated last week
Alternatives and similar repositories for dna-seq-varlociraptor
Users that are interested in dna-seq-varlociraptor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This Snakemake pipeline implements the GATK best-practices workflow☆264Jun 8, 2023Updated 2 years ago
- vembrane filters VCF records using python expressions☆70Apr 13, 2026Updated 3 weeks ago
- This is the development home of the Snakemake wrapper repository, see☆243May 1, 2026Updated last week
- A Github action for running a Snakemake workflow☆62Apr 24, 2026Updated 2 weeks ago
- A crate for working with genomics chain files.☆14Mar 19, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆137Apr 30, 2026Updated last week
- BAM Statistics, Feature Counting and Annotation☆154Apr 16, 2026Updated 3 weeks ago
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated 11 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 3 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆567Apr 30, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Structural variant toolkit for VCFs☆407Mar 21, 2026Updated last month
- Copy number calling and variant classification using targeted short read sequencing☆146Feb 19, 2026Updated 2 months ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- A tool for simulating CNVs for WES data. It simulates rearranged genome(s), short reads (fastq) and BAM file(s) automatically in one sing…☆17Feb 21, 2020Updated 6 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 5 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆415Dec 31, 2025Updated 4 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆846May 2, 2026Updated last week
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆313Apr 24, 2026Updated 2 weeks ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆95Dec 24, 2025Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆59Apr 27, 2026Updated last week
- RNA-seq workflow using STAR and DESeq2☆357Dec 18, 2025Updated 4 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆569Apr 13, 2026Updated 3 weeks ago
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆18Aug 30, 2018Updated 7 years ago
- Documentation of the Snakemake-Workflows project☆157Feb 2, 2022Updated 4 years ago
- The uncompromising Snakemake code formatter☆189Apr 30, 2026Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- Generic human DNA variant annotation pipeline☆60Feb 13, 2024Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Apr 6, 2026Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Per-base per-nucleotide depth analysis☆149Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆404Updated this week