snakemake-workflows / dna-seq-varlociraptorLinks
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
☆86Updated 2 weeks ago
Alternatives and similar repositories for dna-seq-varlociraptor
Users that are interested in dna-seq-varlociraptor are comparing it to the libraries listed below
Sorting:
- BigWig and BAM utilities☆96Updated last year
- A read extraction and realignment tool for next generation sequencing data☆100Updated 2 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 7 months ago
- A catalogue of available long read sequencing data analysis tools☆78Updated 4 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Tips for Nextflow and cheatsheet for channel operation☆78Updated 11 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last month
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆87Updated 8 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- TIDDIT - structural variant calling☆74Updated 3 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- Maximum likelihood demultiplexing☆47Updated 5 months ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆63Updated 4 years ago
- Grep for FASTQ files☆98Updated 3 months ago
- Per-base per-nucleotide depth analysis☆134Updated 2 weeks ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆113Updated 7 months ago
- An awk-like VCF parser☆56Updated last year
- Params validation plugin for Nextflow pipelines☆48Updated 11 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆48Updated this week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆76Updated this week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆39Updated last year
- reference-free transcriptome assembly for short and long reads☆108Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago