Alternatives and similar repositories for dna-seq-varlociraptor

Users that are interested in dna-seq-varlociraptor are comparing it to the libraries listed below

• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆91Updated 4 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆140Updated 3 weeks ago
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆85Updated 8 months ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆127Updated last year
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated last year
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated last month
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆99Updated 6 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆72Updated 3 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 2 months ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆106Updated 4 years ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆150Updated this week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated 2 months ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆93Updated last year
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆113Updated 7 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆75Updated this week
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆145Updated 2 years ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆114Updated last week
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 4 months ago
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆52Updated 2 years ago
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆85Updated last month
• relipmoc / skewer
  ☆94Updated 2 years ago
• parklab / bamsnap
  ☆122Updated 7 months ago
• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆130Updated last month
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆131Updated 5 months ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆47Updated this week
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 3 months ago
• davidebolo1993 / NanoR
  Nanopore data analysis in R
  ☆40Updated last year