This is the development home of the Snakemake wrapper repository, see
☆241Apr 10, 2026Updated this week
Alternatives and similar repositories for snakemake-wrappers
Users that are interested in snakemake-wrappers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The uncompromising Snakemake code formatter☆188Apr 7, 2026Updated last week
- This is the development home of the workflow management system Snakemake. For general information, see☆2,742Apr 7, 2026Updated last week
- Sequana: a set of Snakemake NGS pipelines☆151Apr 7, 2026Updated last week
- This Snakemake pipeline implements the GATK best-practices workflow☆262Jun 8, 2023Updated 2 years ago
- A Github action for running a Snakemake workflow☆62Mar 27, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNA-seq workflow using STAR and DESeq2☆355Dec 18, 2025Updated 3 months ago
- A cookiecutter template for Snakemake workflows☆60Feb 2, 2022Updated 4 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆89Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆402Mar 30, 2026Updated 2 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,439Updated this week
- Cookiecutter for snakemake slurm profile☆134Apr 25, 2024Updated last year
- A template for standard compliant snakemake-workflows☆128Mar 27, 2026Updated 2 weeks ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Feb 3, 2022Updated 4 years ago
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Documentation of the Snakemake-Workflows project☆157Feb 2, 2022Updated 4 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 4 years ago
- ATLAS - Three commands to start analyzing your metagenome data☆404Nov 28, 2025Updated 4 months ago
- A simple Snakemake profile for Slurm without --cluster-config☆165Jun 20, 2024Updated last year
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated last month
- vembrane filters VCF records using python expressions☆69Updated this week
- A set of command line utilities based on Rust-Bio.☆205Jun 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools to process and analyze deep sequencing data.☆754Jul 23, 2025Updated 8 months ago
- Utilities for building and managing bioconda recipes☆104Updated this week
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆840Apr 1, 2026Updated last week
- A tool to find sequencing data and metadata from public databases.☆598Aug 13, 2024Updated last year
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Apr 2, 2026Updated last week
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 7 years ago
- The next version of bwa-mem☆826Oct 15, 2025Updated 6 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Apr 7, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,324Apr 8, 2026Updated last week
- Snakemake wrappers for bioinformatics.☆18Feb 8, 2023Updated 3 years ago
- an API for intersections of genomic data☆149Mar 12, 2026Updated last month
- Snakemake profile for running jobs on an LSF cluster☆38Jul 29, 2024Updated last year
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated last year
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Nov 15, 2018Updated 7 years ago
- Tools for working with SAM/BAM data☆609Dec 22, 2024Updated last year