Alternatives and similar repositories for snakefmt

Users that are interested in snakefmt are comparing it to the libraries listed below

• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆133Updated last year
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆115Updated 3 weeks ago
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆164Updated last year
• snakemake / snakemake-wrappers
  This is the development home of the Snakemake wrapper repository, see
  ☆237Updated this week
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆60Updated 3 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆229Updated last month
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆173Updated 2 weeks ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆61Updated this week
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆266Updated last month
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆183Updated last week
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆80Updated last week
• snakemake-workflows / docs
  Documentation of the Snakemake-Workflows project
  ☆155Updated 3 years ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated last week
• fastqe / fastqe
  FASTQ sequence quality visualisation with Emoji
  ☆171Updated 5 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆149Updated last week
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆42Updated last week
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆81Updated 2 years ago
• biocore / biom-format
  The Biological Observation Matrix (BIOM) Format Project
  ☆95Updated 3 weeks ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆280Updated 4 years ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆45Updated 2 months ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆68Updated last month
• tskit-dev / tskit
  Population-scale Ancestral Recombination Graph (ARG) library
  ☆175Updated this week
• lh3 / readfq
  Fast multi-line FASTA/Q reader in several programming languages
  ☆176Updated 4 years ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆79Updated 9 months ago
• betteridiot / bamnostic
  a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
  ☆98Updated 4 months ago
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆304Updated 2 weeks ago
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆57Updated 6 years ago