Alternatives and similar repositories for snakefmt

Users that are interested in snakefmt are comparing it to the libraries listed below

• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆132Updated last year
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆111Updated 3 weeks ago
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆161Updated last year
• snakemake / snakemake-wrappers
  This is the development home of the Snakemake wrapper repository, see
  ☆232Updated this week
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆229Updated 2 weeks ago
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆168Updated 2 months ago
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆263Updated last month
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆184Updated last week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• tskit-dev / tskit
  Population-scale Ancestral Recombination Graph (ARG) library
  ☆168Updated last week
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆59Updated 2 months ago
• snakemake-workflows / docs
  Documentation of the Snakemake-Workflows project
  ☆154Updated 3 years ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated last week
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆81Updated 2 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆299Updated 3 weeks ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆103Updated this week
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆138Updated this week
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 4 years ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆78Updated 6 months ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆66Updated 3 months ago
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆41Updated this week
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆39Updated last week
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• lh3 / readfq
  Fast multi-line FASTA/Q reader in several programming languages
  ☆177Updated 4 years ago
• nextflow-io / nf-prov
  ☆30Updated 2 weeks ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆54Updated 3 years ago