snakemake / snakefmt
The uncompromising Snakemake code formatter
☆153Updated 5 months ago
Alternatives and similar repositories for snakefmt:
Users that are interested in snakefmt are comparing it to the libraries listed below
- Cookiecutter for snakemake slurm profile☆126Updated 7 months ago
- A template for standard compliant snakemake-workflows☆89Updated last year
- A simple Snakemake profile for Slurm without --cluster-config☆144Updated 5 months ago
- A cookiecutter template for Snakemake workflows☆57Updated 2 years ago
- This is the development home of the Snakemake wrapper repository, see☆216Updated this week
- Simple test framework for Nextflow pipelines☆147Updated last week
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆192Updated 2 weeks ago
- A C library for handling bigWig files☆75Updated 2 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆88Updated last week
- minimal example implementations for bioinformatics workflow managers☆264Updated 3 years ago
- A variational framework for inferring population structure from SNP genotype data.☆135Updated last year
- NBIS/Elixir course: Tools for Reproducible Research☆62Updated 2 weeks ago
- Test data to be used for automated testing with the nf-core pipelines☆109Updated this week
- A declarative interactive genomics visualization library for Python.☆218Updated 3 weeks ago
- Extension for Jupyter which integrates igv.js☆154Updated last year
- Monitor computational workflows in real time☆68Updated 6 months ago
- A Github action for running a Snakemake workflow☆53Updated last week
- Testing building mulled containers for multi-requirement tools.☆69Updated this week
- Genomic interval operations on Pandas DataFrames☆175Updated last week
- Pairwise whole genome aligner☆140Updated this week
- A collection of reusable WDL tasks. Category:Other☆85Updated this week
- HyPhy: Hypothesis testing using Phylogenies☆223Updated 3 weeks ago
- Utilities for building and managing bioconda recipes☆98Updated this week
- Tools for plotting methylation data in various ways☆134Updated 2 months ago
- Hierarchical Alignment Format☆165Updated this week
- A minimap2 frontend for PacBio native data formats☆177Updated this week
- A fast whole-genome aligner based on de Bruijn graphs☆142Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆124Updated last year
- Population-scale genotyping using pangenome graphs☆174Updated 9 months ago