snakemake / snakefmtLinks
The uncompromising Snakemake code formatter
☆168Updated 2 months ago
Alternatives and similar repositories for snakefmt
Users that are interested in snakefmt are comparing it to the libraries listed below
Sorting:
- Cookiecutter for snakemake slurm profile☆132Updated last year
- A template for standard compliant snakemake-workflows☆98Updated 2 weeks ago
- A simple Snakemake profile for Slurm without --cluster-config☆155Updated 11 months ago
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- This is the development home of the Snakemake wrapper repository, see☆230Updated this week
- minimal example implementations for bioinformatics workflow managers☆274Updated 3 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 3 months ago
- NBIS/Elixir course: Tools for Reproducible Research☆65Updated last month
- Simple test framework for Nextflow pipelines☆160Updated 5 months ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Scalable genetics toolkit☆257Updated last week
- A declarative interactive genomics visualization library for Python.☆226Updated 3 weeks ago
- A tool to create visual HTML reports from collections of CSV/TSV tables☆122Updated this week
- Monitor computational workflows in real time☆73Updated last year
- Documentation of the Snakemake-Workflows project☆155Updated 3 years ago
- Testing building mulled containers for multi-requirement tools.☆73Updated this week
- a long read simulator that can imitate many types of read problems☆221Updated 10 months ago
- Efficiently read and write sequencing data from Python☆64Updated last week
- Genomic interval operations on Pandas DataFrames☆183Updated last week
- Tools for plotting methylation data in various ways☆148Updated last week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆124Updated 5 years ago
- Module for embedding igv.js in an IPython notebook☆75Updated 3 months ago
- Python package with helper tools for the nf-core community.☆259Updated this week
- Turn an existing conda environment into a Singularity container☆80Updated 2 years ago
- SEER, reimplemented in python 🐍🔮☆122Updated 2 weeks ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆162Updated 2 weeks ago
- A collection of reusable WDL tasks. Category:Other☆87Updated this week
- Experimental features for Nextflow☆43Updated 2 months ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated this week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago