Alternatives and similar repositories for snakefmt

Users that are interested in snakefmt are comparing it to the libraries listed below

• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆134Updated last year
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆122Updated 2 weeks ago
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆165Updated last year
• snakemake / snakemake-wrappers
  This is the development home of the Snakemake wrapper repository, see
  ☆238Updated last week
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆174Updated 2 weeks ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆60Updated 4 years ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆234Updated 2 months ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆62Updated last month
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆47Updated last week
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆274Updated 4 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆82Updated 3 years ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆63Updated 3 months ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆83Updated this week
• tskit-dev / tskit
  Population-scale Ancestral Recombination Graph (ARG) library
  ☆176Updated last week
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆188Updated last week
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 3 years ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆48Updated last month
• snakemake-workflows / docs
  Documentation of the Snakemake-Workflows project
  ☆156Updated 4 years ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆280Updated 4 years ago
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆67Updated 2 weeks ago
• Boehringer-Ingelheim / dso
  Data Science Operations (dso) command line tool
  ☆44Updated 5 months ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆80Updated last year
• cademirch / snkmt
  A TUI for monitoring Snakemake workflows in real-time.
  ☆50Updated last month
• HadrienG / InSilicoSeq
  A sequencing simulator
  ☆219Updated 7 months ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆69Updated 3 months ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 2 months ago
• nextflow-io / nf-prov
  Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…
  ☆30Updated last month
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated 2 weeks ago