Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
☆15May 18, 2026Updated last week
Alternatives and similar repositories for pybedlite
Users that are interested in pybedlite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality of life improvements for Bioinformatics in Python.☆33May 7, 2026Updated 2 weeks ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆45Updated this week
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 5 months ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10May 1, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 2 months ago
- Genomic interval operations on Pandas DataFrames☆191May 4, 2026Updated 3 weeks ago
- Take command of your set enrichment analyses.☆23Updated this week
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated 2 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Document each modification of your software by turning your git commits into a gitbook☆35Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆12Dec 6, 2023Updated 2 years ago
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- Container class to represent genomic locations and support genomic analysis☆27May 18, 2026Updated last week
- ☆26Apr 21, 2025Updated last year
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- ☆18Aug 22, 2021Updated 4 years ago
- ATaRVa - Analysis of Tandem Repeat Variation☆21May 18, 2026Updated last week
- Python Primer Design Library☆14Mar 27, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Detection and genotyping of structural variants☆20May 17, 2026Updated last week
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- A program for the analysis of single cell nanopore long read data☆21Jul 1, 2025Updated 10 months ago
- Grep for FASTQ files☆104Apr 30, 2026Updated 3 weeks ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆15Sep 16, 2025Updated 8 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated last year
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated last month
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆14May 8, 2026Updated 2 weeks ago
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆10Apr 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 2 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- ☆11Jun 17, 2023Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- R package with well defined templates for most common pipelines☆18Jul 11, 2025Updated 10 months ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated last month