fulcrumgenomics / pybedlite
Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
☆14Updated this week
Alternatives and similar repositories for pybedlite:
Users that are interested in pybedlite are comparing it to the libraries listed below
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated 11 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Fast sequencing data quality metrics☆25Updated last week
- k-mer similarity analysis pipeline☆20Updated last month
- Split a BAM file by haplotype support☆16Updated 7 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- ☆16Updated 2 months ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 5 months ago
- Unfazed by genomic variant phasing☆26Updated 9 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Two pass alignment for long reads☆22Updated 4 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- Bedfile perturbation tool☆17Updated last year
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- ☆22Updated 3 months ago
- Benchmark structural variant calls against a reference set☆17Updated 4 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 4 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 5 months ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 7 months ago
- Variant call adjudication☆16Updated 9 months ago