fulcrumgenomics / pybedliteLinks
Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
☆14Updated 2 months ago
Alternatives and similar repositories for pybedlite
Users that are interested in pybedlite are comparing it to the libraries listed below
Sorting:
- CLI to automate Nextflow pipeline testing☆12Updated this week
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆20Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆24Updated 2 weeks ago
- k-mer similarity analysis pipeline☆22Updated last month
- Bedfile perturbation tool☆17Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 7 months ago
- Fast sequencing data quality metrics☆27Updated 2 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- UMCU Genetics Nextflow modules☆28Updated 10 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆16Updated 7 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Structural variant pipeline☆17Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Quality of life improvements for Bioinformatics in Python.☆30Updated 2 weeks ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- BED QC tool (in the making)☆16Updated 3 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 5 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last month