Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
☆16Jul 10, 2026Updated 2 months ago
Alternatives and similar repositories for pybedlite
Users that are interested in pybedlite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality of life improvements for Bioinformatics in Python.☆35Sep 15, 2026Updated last week
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 9 months ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated 3 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Feature-rich Python implementation of the tximport package for gene count estimation.☆45Jul 10, 2026Updated 2 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Genomic interval operations on Pandas DataFrames☆196Sep 7, 2026Updated 2 weeks ago
- deploy a snakemake pipeline directly from version control (under development)☆27Updated this week
- Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects☆16Oct 30, 2023Updated 2 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Document each modification of your software by turning your git commits into a gitbook☆36Sep 16, 2026Updated last week
- ☆12Dec 6, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 3 years ago
- a minimal, scriptable genome browser for python☆55Dec 20, 2024Updated last year
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago