beardymcjohnface / SnaketoolLinks
Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
☆51Updated last year
Alternatives and similar repositories for Snaketool
Users that are interested in Snaketool are comparing it to the libraries listed below
Sorting:
- Snakemake workflow management system and CLI generation tool☆59Updated 2 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated last month
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆55Updated last week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆62Updated 11 months ago
- Remove human reads from a sequencing run☆40Updated 3 weeks ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆40Updated 9 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- ☆17Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last week
- ☆42Updated 3 weeks ago
- ☆26Updated 2 years ago
- map Illumina metagenomes to genomes!☆39Updated last week
- Interactive phylogenetic tree viewer/editor☆47Updated 2 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated last month
- Nail is an Alignment Inference tooL☆51Updated this week
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 4 months ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- Main development repository for SpreadGL☆19Updated 10 months ago
- Recombination-free trees☆59Updated 4 months ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated 2 weeks ago