beardymcjohnface / SnaketoolLinks
Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
☆51Updated last year
Alternatives and similar repositories for Snaketool
Users that are interested in Snaketool are comparing it to the libraries listed below
Sorting:
- Snakemake workflow management system and CLI generation tool☆61Updated 3 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 10 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- map Illumina metagenomes to genomes!☆38Updated 3 weeks ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 3 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 2 weeks ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆37Updated this week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated last week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- Nail is an Alignment Inference tooL☆52Updated 3 weeks ago
- ☆29Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Updated 3 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A versatile toolkit for k-mers with taxonomic information☆79Updated last month
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last month
- Python bindings for the TaxonKit library☆40Updated 3 months ago
- ☆26Updated 2 years ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 8 months ago
- Interactive phylogenetic tree viewer/editor☆48Updated 2 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago