snakemake-workflows / docsLinks
Documentation of the Snakemake-Workflows project
☆155Updated 3 years ago
Alternatives and similar repositories for docs
Users that are interested in docs are comparing it to the libraries listed below
Sorting:
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 8 months ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆152Updated 9 months ago
- Documentation and description of AWS iGenomes S3 resource.☆115Updated 8 months ago
- Web application to explore the Sequence Read Archive.☆219Updated last month
- New user☆42Updated 4 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆143Updated last year
- Transcript quantification import for modular pipelines☆141Updated last week
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- Statistical Analysis of RNA-Seq Tools☆106Updated 4 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆135Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- ☆180Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆105Updated 2 months ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆174Updated 8 months ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- Learning the Variant Call Format☆143Updated 2 weeks ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Example Nextflow pipelines and programming techniques☆107Updated 3 months ago
- GWAS Pipeline for H3Africa☆111Updated 3 months ago
- ☆72Updated 3 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆131Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆223Updated 3 months ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- minimal example implementations for bioinformatics workflow managers☆278Updated 3 years ago
- Learning the Sequence Alignment/Map format☆114Updated 2 weeks ago
- Copy number calling and variant classification using targeted short read sequencing☆137Updated 3 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆109Updated 5 years ago