snakemake-workflows / docsLinks
Documentation of the Snakemake-Workflows project
☆156Updated 3 years ago
Alternatives and similar repositories for docs
Users that are interested in docs are comparing it to the libraries listed below
Sorting:
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 8 months ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆105Updated 2 months ago
- Example Nextflow pipelines and programming techniques☆107Updated 2 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆113Updated 6 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Transcript quantification import for modular pipelines☆141Updated last month
- Learning the Variant Call Format☆142Updated this week
- Statistical Analysis of RNA-Seq Tools☆106Updated 4 months ago
- minimal example implementations for bioinformatics workflow managers☆278Updated 3 years ago
- Learning the Sequence Alignment/Map format☆114Updated this week
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆109Updated 5 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆151Updated 9 months ago
- Web application to explore the Sequence Read Archive.☆218Updated 2 weeks ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆106Updated 2 years ago
- Match up paired end fastq files quickly and efficiently.☆151Updated last year
- Sequana: a set of Snakemake NGS pipelines☆146Updated last week
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆131Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆223Updated 2 months ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆143Updated last year
- ☆72Updated 3 years ago
- Visualizing transcript structure and annotation using ggplot2☆158Updated 11 months ago
- Integrated Differential Expression and Pathway analysis☆132Updated last week
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆164Updated 2 months ago
- Issue tracker for the Biostar Handbook☆63Updated 3 years ago
- New user☆42Updated 4 years ago