Documentation of the Snakemake-Workflows project
☆160Feb 2, 2022Updated 4 years ago
Alternatives and similar repositories for docs
Users that are interested in docs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq workflow using STAR and DESeq2☆367Dec 18, 2025Updated 7 months ago
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 4 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆267Jun 8, 2023Updated 3 years ago
- A Github action for running a Snakemake workflow☆63Apr 24, 2026Updated 2 months ago
- RNA-Seq analysis workflow☆106Jul 14, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 4 months ago
- This is the development home of the Snakemake wrapper repository, see☆249Updated this week
- A template for standard compliant snakemake-workflows☆136Mar 27, 2026Updated 3 months ago
- A SingleCell RNASeq pre-processing pipeline built on snakemake☆14Jan 11, 2023Updated 3 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆90Updated this week
- The uncompromising Snakemake code formatter☆195Jun 26, 2026Updated 3 weeks ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 8 months ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Sequana: a set of Snakemake NGS pipelines☆151Jul 2, 2026Updated 3 weeks ago
- Monitor computational workflows in real time☆73Jul 6, 2026Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆762Updated this week
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆107Nov 22, 2022Updated 3 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆406Updated this week
- This is the development home of the workflow management system Snakemake. For general information, see☆2,835Updated this week
- Misc. utilities☆11May 21, 2019Updated 7 years ago
- RNA-seq workflow for Snakemake based on STAR and featureCounts.☆24May 25, 2019Updated 7 years ago
- A cookiecutter template for Snakemake workflows☆60Feb 2, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆27Aug 8, 2024Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆166Jun 14, 2026Updated last month
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆682Mar 20, 2026Updated 4 months ago
- ☆13Jan 8, 2020Updated 6 years ago
- minimal example implementations for bioinformatics workflow managers☆290Oct 27, 2021Updated 4 years ago
- Analysis pipeline for cancer sequencing data☆113Apr 24, 2026Updated 2 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21May 29, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- RNAseq analysis notes from Ming Tang☆1,093Nov 15, 2021Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆83Feb 14, 2025Updated last year
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆110Aug 18, 2025Updated 11 months ago
- The next version of bwa-mem☆852Oct 15, 2025Updated 9 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Mar 20, 2026Updated 4 months ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year