Documentation of the Snakemake-Workflows project
☆160Feb 2, 2022Updated 4 years ago
Alternatives and similar repositories for docs
Users that are interested in docs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq workflow using STAR and DESeq2☆373Oct 21, 2026Updated last week
- Documentation of the Snakemake-Profiles project.☆54Mar 15, 2022Updated 4 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆267Jun 8, 2023Updated 3 years ago
- A template for standard compliant snakemake-workflows☆139Mar 27, 2026Updated 7 months ago
- This is the development home of the Snakemake wrapper repository, see☆254Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Github action for running a Snakemake workflow☆64Apr 24, 2026Updated 6 months ago
- RNA-Seq analysis workflow☆106Jul 14, 2021Updated 5 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆90Updated this week
- A SingleCell RNASeq pre-processing pipeline built on snakemake☆14Jan 11, 2023Updated 3 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆106Nov 22, 2022Updated 3 years ago
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 7 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- Monitor computational workflows in real time☆76Oct 24, 2026Updated last week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆404Oct 21, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Agent skills for building and running Nextflow pipelines.☆25Oct 13, 2026Updated 2 weeks ago
- The uncompromising Snakemake code formatter☆196Updated this week
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 7 years ago
- RNAseq analysis notes from Ming Tang