snakemake-workflows / docs
Documentation of the Snakemake-Workflows project
☆152Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for docs
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆160Updated last month
- Detecting sites of genomic enrichment☆187Updated last year
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆187Updated 8 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆164Updated 5 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆212Updated last year
- Pipeline to fetch metadata and raw FastQ files from public databases☆152Updated last week
- This is the development home of the Snakemake wrapper repository, see☆214Updated this week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆94Updated last week
- A collection of scripts and notes related to genomics and bioinformatics☆200Updated 2 weeks ago
- Web application to explore the Sequence Read Archive.☆203Updated 6 months ago
- BEDOPS: high-performance genomic feature operations☆300Updated 9 months ago
- RNA-Seq analysis workflow☆105Updated 3 years ago
- Download FASTQ files from SRA or ENA repositories.☆276Updated last month
- ☆70Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated last year
- Transcript quantification import for modular pipelines☆136Updated 7 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆228Updated 3 weeks ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆124Updated 5 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆132Updated last year
- Extension for Jupyter which integrates igv.js☆154Updated last year
- Example Nextflow pipelines and programming techniques☆101Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆142Updated 5 months ago
- ASCAT R package☆168Updated 3 weeks ago
- Generate IGV style locus tracks from bigWig files in R☆141Updated 3 weeks ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆104Updated last year
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆299Updated 10 months ago
- Documentation and description of AWS iGenomes S3 resource.☆107Updated 4 years ago
- minimal example implementations for bioinformatics workflow managers☆261Updated 3 years ago
- A Python-based EGA download client☆94Updated 2 months ago