Documentation of the Snakemake-Workflows project
☆157Feb 2, 2022Updated 4 years ago
Alternatives and similar repositories for docs
Users that are interested in docs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq workflow using STAR and DESeq2☆354Dec 18, 2025Updated 3 months ago
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 4 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆262Jun 8, 2023Updated 2 years ago
- A Github action for running a Snakemake workflow☆62Mar 27, 2026Updated 2 weeks ago
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- This is the development home of the Snakemake wrapper repository, see☆241Apr 3, 2026Updated last week
- RNA-Seq analysis workflow☆105Jul 14, 2021Updated 4 years ago
- A template for standard compliant snakemake-workflows☆126Mar 27, 2026Updated 2 weeks ago
- A SingleCell RNASeq pre-processing pipeline built on snakemake☆14Jan 11, 2023Updated 3 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆89Apr 5, 2026Updated last week
- The uncompromising Snakemake code formatter☆188Updated this week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 5 months ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Sequana: a set of Snakemake NGS pipelines☆151Mar 29, 2026Updated last week
- Monitor computational workflows in real time☆73May 23, 2024Updated last year
- Tools to process and analyze deep sequencing data.☆753Jul 23, 2025Updated 8 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆402Mar 30, 2026Updated last week
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆108Nov 22, 2022Updated 3 years ago
- This is the development home of the workflow management system Snakemake. For general information, see☆2,742Updated this week
- Misc. utilities☆11May 21, 2019Updated 6 years ago
- A cookiecutter template for Snakemake workflows☆60Feb 2, 2022Updated 4 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Oct 2, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- ☆13Jan 8, 2020Updated 6 years ago
- RNA-seq workflow for Snakemake based on STAR and featureCounts.☆23May 25, 2019Updated 6 years ago
- minimal example implementations for bioinformatics workflow managers☆283Oct 27, 2021Updated 4 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆672Mar 20, 2026Updated 3 weeks ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 11 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Jan 30, 2026Updated 2 months ago
- ☆26Aug 8, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Mar 20, 2026Updated 3 weeks ago
- RNAseq analysis notes from Ming Tang☆1,076Nov 15, 2021Updated 4 years ago
- The next version of bwa-mem☆826Oct 15, 2025Updated 5 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Aug 18, 2025Updated 7 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆563Jul 13, 2024Updated last year
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,437Mar 28, 2026Updated 2 weeks ago