Alternatives and similar repositories for prymer

Users that are interested in prymer are comparing it to the libraries listed below

• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated last month
• Sentieon / sentieon-models
  Model files for Sentieon variant callers
  ☆16Updated last week
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆17Updated last year
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 2 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated last month
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 4 months ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆53Updated 4 months ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated this week
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆45Updated last month
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆108Updated 3 weeks ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last month
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆31Updated last week
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆76Updated this week
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last month
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 6 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 10 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆42Updated 2 weeks ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 8 months ago
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆19Updated last week
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated last year
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆69Updated last week
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆28Updated last year
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• plasslab / SCALPEL
  Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.
  ☆18Updated this week
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆58Updated last month