zsq-berry / 3D-genome-toolsLinks
☆12Updated 3 years ago
Alternatives and similar repositories for 3D-genome-tools
Users that are interested in 3D-genome-tools are comparing it to the libraries listed below
Sorting:
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 6 months ago
- ☆19Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- ☆30Updated 8 months ago
- ☆35Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Statistically Significant loops from HiChIP data☆44Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆38Updated this week
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Web-Application for the cross-visualization of HiC and ChIP-seq data.☆18Updated 9 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆27Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- ☆17Updated last year
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Updated 5 years ago
- isoCirc☆10Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 3 weeks ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated last year
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated 2 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last week
- Snakemake pipeline for microexon discovery and quantification☆20Updated 7 months ago
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- ☆21Updated 5 years ago