zsq-berry / 3D-genome-toolsLinks
☆12Updated 2 years ago
Alternatives and similar repositories for 3D-genome-tools
Users that are interested in 3D-genome-tools are comparing it to the libraries listed below
Sorting:
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 2 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆20Updated 5 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 4 months ago
- ☆19Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- ☆22Updated 4 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- ☆37Updated 5 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆16Updated 3 weeks ago
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- ☆28Updated 6 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆48Updated 6 years ago
- ☆21Updated 4 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- ☆17Updated last year
- Detection and couting alternative TSS in single cells☆14Updated last year
- ☆11Updated 3 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- ☆19Updated 2 years ago