greenelab / tad_pathways_pipelineLinks
Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
☆11Updated 5 years ago
Alternatives and similar repositories for tad_pathways_pipeline
Users that are interested in tad_pathways_pipeline are comparing it to the libraries listed below
Sorting:
- ☆18Updated 6 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆14Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Long read to rMATS☆31Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- model-based understanding of single-cell CRISPR screening☆24Updated 7 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- ☆16Updated 8 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆25Updated 10 months ago
- Transcriptome-wide network☆16Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 9 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated 2 years ago
- a R package to identify neoantigens from NGS data☆19Updated 8 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆19Updated 3 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆22Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Statistical power studies for multi-omics experiments.☆32Updated 5 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆29Updated 4 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆21Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆19Updated 2 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago