Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
☆11Dec 21, 2019Updated 6 years ago
Alternatives and similar repositories for tad_pathways_pipeline
Users that are interested in tad_pathways_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 2 weeks ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- ☆12Apr 28, 2026Updated 2 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- ☆17May 30, 2022Updated 4 years ago
- ☆18Mar 12, 2024Updated 2 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- ☆19Nov 9, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- False discovery rate regression☆10Nov 12, 2020Updated 5 years ago
- Single cell Morphology Quality Control (coSMicQC)☆11Updated this week
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- This network estimation procedure combines l1-regularized logistic regression with model selection based on the Extended Bayesian Informa…☆10Oct 12, 2023Updated 2 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆48Apr 8, 2022Updated 4 years ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- Model selection and stability plots☆12Jun 9, 2026Updated last month
- Code supporting analyses in paper on fine-mapping AD loci☆16Jun 28, 2021Updated 5 years ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- False discovery rate smoothing☆14May 8, 2020Updated 6 years ago
- ☆14Jul 18, 2021Updated 5 years ago
- Tutorial on survival modeling with omics data☆11May 6, 2026Updated 2 months ago
- pulsar: Parallel Utilities for Lambda Selection along a Regularization Path☆10Mar 28, 2026Updated 3 months ago
- ☆11May 12, 2021Updated 5 years ago
- Transcriptome-wide network☆16Jul 27, 2019Updated 6 years ago
- A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.☆11Aug 25, 2022Updated 3 years ago