dekkerlab / crane-nature-2015Links
code associated with crane-nature-2015, 10.1038/nature14450
☆36Updated 10 years ago
Alternatives and similar repositories for crane-nature-2015
Users that are interested in crane-nature-2015 are comparing it to the libraries listed below
Sorting:
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆47Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- 4C-seq processing pipeline☆24Updated 5 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated 2 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- A Python implementation for BH-FDR and HiCCUPS☆50Updated 4 months ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Docker for 4DN Hi-C processing pipeline☆61Updated 9 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- IDR☆31Updated 2 years ago
- Package for analysis and characterization of differential TADs☆25Updated 3 years ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆60Updated this week
- ☆36Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- chia pet analysis software☆25Updated 6 years ago