dekkerlab / crane-nature-2015
code associated with crane-nature-2015, 10.1038/nature14450
☆34Updated 9 years ago
Alternatives and similar repositories for crane-nature-2015:
Users that are interested in crane-nature-2015 are comparing it to the libraries listed below
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆42Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- IDR☆31Updated 2 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- 4C-seq processing pipeline☆23Updated last month
- ☆37Updated 5 years ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- ☆24Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- A self-contained repository of all code needed for SPRITE analysis☆20Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Tutorial Website☆59Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 4 years ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- A preprocessing and QC pipeline for HiChIP data☆38Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Package for analysis and characterization of differential TADs☆23Updated 3 years ago