Jfortin1 / TCGA_AB_CompartmentsLinks
A/B compartments for 12 cancer types estimated from TCGA methylation data
☆20Updated 8 years ago
Alternatives and similar repositories for TCGA_AB_Compartments
Users that are interested in TCGA_AB_Compartments are comparing it to the libraries listed below
Sorting:
- ☆39Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆13Updated 8 years ago
- BISulfite-seq CUI Toolkit☆25Updated 2 weeks ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- chia pet analysis software☆25Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Genomic Association Tester☆35Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆22Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Updated 4 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 4 months ago
- ☆13Updated 8 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Cloud-based single-cell copy-number variation analysis tool☆53Updated 2 years ago
- ☆26Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago