Jfortin1 / TCGA_AB_CompartmentsLinks
A/B compartments for 12 cancer types estimated from TCGA methylation data
☆20Updated 8 years ago
Alternatives and similar repositories for TCGA_AB_Compartments
Users that are interested in TCGA_AB_Compartments are comparing it to the libraries listed below
Sorting:
- ☆38Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- QC report generator for Hi-C pairs file☆12Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆21Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 8 years ago
- chia pet analysis software☆25Updated 6 years ago
- Genomic Association Tester☆32Updated 2 years ago
- ☆12Updated 5 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated last month
- ☆26Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 10 months ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- ☆23Updated 10 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- DriverPower☆26Updated 9 months ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- Cloud-based single-cell copy-number variation analysis tool☆52Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year