Jfortin1 / TCGA_AB_Compartments
A/B compartments for 12 cancer types estimated from TCGA methylation data
☆20Updated 8 years ago
Alternatives and similar repositories for TCGA_AB_Compartments
Users that are interested in TCGA_AB_Compartments are comparing it to the libraries listed below
Sorting:
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆13Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Genomic Association Tester☆31Updated 2 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆10Updated 5 years ago
- ☆25Updated 11 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- ☆13Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- chia pet analysis software☆25Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆21Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- ☆24Updated 9 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆28Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago
- DriverPower☆26Updated 4 months ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- BISulfite-seq CUI Toolkit☆19Updated this week
- Differential ATAC-seq toolkit☆27Updated last year
- R package for Methylation-based Inference of Regulatory Activity☆13Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated 7 months ago