Jfortin1 / TCGA_AB_Compartments
A/B compartments for 12 cancer types estimated from TCGA methylation data
☆18Updated 8 years ago
Alternatives and similar repositories for TCGA_AB_Compartments:
Users that are interested in TCGA_AB_Compartments are comparing it to the libraries listed below
- ☆12Updated 8 years ago
- Genomic Association Tester☆30Updated last year
- ☆20Updated 4 years ago
- QC report generator for Hi-C pairs file☆10Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- ☆13Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- ☆12Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago
- BISulfite-seq CUI Toolkit☆18Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- ☆23Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago