LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model
☆14Jun 18, 2021Updated 5 years ago
Alternatives and similar repositories for LoopPredictor
Users that are interested in LoopPredictor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 6 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 3 months ago
- ☆10Oct 24, 2024Updated 2 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement☆10Oct 15, 2020Updated 6 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- ☆31Dec 8, 2022Updated 3 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- ☆18Mar 12, 2024Updated 2 years ago
- ☆20Jun 8, 2023Updated 3 years ago
- ☆18Sep 6, 2022Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 4 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆28Jan 25, 2022Updated 4 years ago
- ☆14Apr 2, 2024Updated 2 years ago
- Tutorial on survival modeling with omics data☆12May 6, 2026Updated 5 months ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 7 years ago
- A simple script I use to send commands from emacs to iTerm2 on Mac OS X☆11Jan 25, 2018Updated 8 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Documentation for PEP specification and all PEPkit software☆10Oct 26, 2026Updated last week
- ☆15Aug 16, 2026Updated 2 months ago
- Ransac to find road plane from 3d stereo data☆11Oct 3, 2018Updated 8 years ago
- Statistical analysis for spatial omics data☆12Jul 30, 2022Updated 4 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆29Feb 4, 2023Updated 3 years ago
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Aug 4, 2020Updated 6 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Jan 23, 2023Updated 3 years ago
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 9 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Jun 16, 2023Updated 3 years ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 4 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- Makes distinct TSS of each gene from a Gencode annotation☆10Oct 19, 2016Updated 10 years ago
- awd attack framework，Django + Mysql☆16Feb 8, 2025Updated last year
- Motif Enrichment In Ranked Lists Of Peaks☆10Jun 17, 2021Updated 5 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated 2 years ago