TheJacksonLaboratory / ChIA-PIPELinks
ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization
☆29Updated 4 years ago
Alternatives and similar repositories for ChIA-PIPE
Users that are interested in ChIA-PIPE are comparing it to the libraries listed below
Sorting:
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated 2 months ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆20Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Genome-wide contact analysis using sklearn☆68Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆23Updated 4 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 9 months ago
- Docker for 4DN Hi-C processing pipeline☆61Updated 9 months ago
- ☆50Updated 6 years ago
- Tutorial Website☆59Updated 4 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆60Updated last week
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆63Updated last year
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 4 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Package for analysis and characterization of differential TADs☆25Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆74Updated last month
- 4C-seq processing pipeline☆24Updated 5 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆71Updated last year
- ☆58Updated last month
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Allele-specific alignment sorting☆58Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆50Updated 4 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- ☆24Updated 4 years ago