jeanlain / HTvertebratesLinks
scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species
☆11Updated 4 years ago
Alternatives and similar repositories for HTvertebrates
Users that are interested in HTvertebrates are comparing it to the libraries listed below
Sorting:
- ☆16Updated 6 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- ☆16Updated 4 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- A long-read SV calling pipeline☆12Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- Consensus genome annotation using OMA☆31Updated last week
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated 3 weeks ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- repository for code used in analysis of open wild wheat consortium☆18Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- ☆29Updated 2 years ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆14Updated 6 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 5 years ago
- Newick tree processing☆13Updated 2 months ago
- Study of TE evolution in a population of genomes☆10Updated 2 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- ☆44Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Identification of conserved non-coding sequences in plants☆31Updated 3 months ago
- Modified TIR-Learner for Rice genome☆12Updated 6 years ago