scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species
☆11May 16, 2021Updated 4 years ago
Alternatives and similar repositories for HTvertebrates
Users that are interested in HTvertebrates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 3 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- ☆12Feb 16, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆22Nov 14, 2020Updated 5 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 7 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- Analyses of sex chromosome evolution in songbirds☆17Jun 15, 2019Updated 6 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 3 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- An R package to infer and analyze synteny networks from protein sequences☆38Jul 23, 2025Updated 9 months ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Updated this week
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- ☆18Nov 9, 2020Updated 5 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Code repository for the Global Ant Genomics Alliance☆17Jun 16, 2025Updated 10 months ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆81Apr 30, 2021Updated 5 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- ggpie - A ggplot2 extension to create pie, donut and rose pie plot☆50Oct 30, 2023Updated 2 years ago
- Synteny Mapping and Analysis Program☆30Apr 1, 2026Updated 3 weeks ago
- BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins☆100Apr 9, 2026Updated 3 weeks ago
- Exploring the Phylogenetic Signal in Continuous Traits☆19Jun 10, 2025Updated 10 months ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Sep 20, 2025Updated 7 months ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago