YutingPKU / AnalysisPipeline-NGS
☆12Updated 4 years ago
Alternatives and similar repositories for AnalysisPipeline-NGS:
Users that are interested in AnalysisPipeline-NGS are comparing it to the libraries listed below
- ☆24Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆18Updated 5 years ago
- ☆11Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- Extract Sequence from Genome According to Annotation File☆32Updated 3 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆10Updated 2 years ago
- A comprehensive pipeline for Ribo-seq data analysis☆10Updated last year
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- ☆17Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- ☆10Updated 5 months ago
- an efficient Hi-C data processing pipeline☆16Updated last year
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- ☆18Updated 11 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆18Updated last year
- ☆17Updated 4 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 5 months ago
- Profile and Heatmap Visualization by Using ggplot2 and grid☆10Updated last year
- ☆21Updated 3 weeks ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- An R package for time course sequencing data analysis☆19Updated last year