☆12Jul 19, 2019Updated 6 years ago
Alternatives and similar repositories for Hic_tools_collection
Users that are interested in Hic_tools_collection are comparing it to the libraries listed below
Sorting:
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- ☆13Jan 20, 2026Updated last month
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- ☆18Mar 12, 2024Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21May 11, 2023Updated 2 years ago
- ☆12Dec 15, 2020Updated 5 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 4 months ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- Micro-C QC and data analysis☆16Aug 1, 2023Updated 2 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆204Feb 27, 2026Updated last week
- Simple library/pipeline to generate and handle Hi-C data.☆39Feb 13, 2026Updated 3 weeks ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 4 years ago
- ☆17Nov 9, 2020Updated 5 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Nov 14, 2024Updated last year
- ☆19Aug 29, 2025Updated 6 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Jan 31, 2024Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- Architectural stripe detection from 3D genome conformation data☆18Sep 15, 2025Updated 5 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆64Nov 14, 2025Updated 3 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Nov 29, 2022Updated 3 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- A collection of tools for Hi-C data analysis☆631Updated this week
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- ☆25May 14, 2021Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated 11 months ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Aug 6, 2024Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆268Jul 17, 2025Updated 7 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆125Feb 3, 2026Updated last month
- Comparison of Hi-C Experiments using Structural Similarity.☆28Jul 18, 2023Updated 2 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago