zhongmicai / Hic_tools_collectionLinks
☆11Updated 5 years ago
Alternatives and similar repositories for Hic_tools_collection
Users that are interested in Hic_tools_collection are comparing it to the libraries listed below
Sorting:
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆13Updated 2 years ago
- ☆37Updated 5 years ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 7 months ago
- ☆26Updated 3 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆11Updated 2 years ago
- Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis☆8Updated 5 years ago
- ☆16Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- an efficient Hi-C data processing pipeline☆17Updated last year
- ☆24Updated 4 years ago
- ☆19Updated 10 months ago
- ☆22Updated last year
- ☆21Updated 2 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- 4C-seq processing pipeline☆23Updated 2 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆18Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- ☆15Updated 3 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- ☆21Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago