Alternatives and similar repositories for multiHiCcompare

Users that are interested in multiHiCcompare are comparing it to the libraries listed below

• CSOgroup / CALDER
  ☆22Updated 2 years ago
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆20Updated last year
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆23Updated 2 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• scoutzxb / CscoreTool
  ☆22Updated 5 years ago
• plantformatics / Socrates
  ☆23Updated 9 months ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆23Updated 6 years ago
• jkimlab / msPIPE
  ☆20Updated 2 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 4 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 4 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆46Updated last year
• Tian-Dechao / diffDomain
  DiffDomain is a statistically sound method for detecting differential TADs between conditions
  ☆17Updated 5 months ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆20Updated 6 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• XiaoTaoWang / domaincaller
  A Python implementation of the original DI domain caller
  ☆12Updated 5 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆26Updated last year
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆22Updated last year
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆24Updated 4 years ago
• zhongmicai / Hic_tools_collection
  ☆12Updated 6 years ago
• Xinglab / rMATS-long
  ☆34Updated last month
• mortazavilab / cerberus
  ☆20Updated last year
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆40Updated 4 years ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• CSOgroup / CALDER2
  CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…
  ☆26Updated 8 months ago
• Zhang-lab / BeCorrect
  ☆15Updated 4 years ago
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆32Updated 2 weeks ago
• WGLab / SCOTCH
  Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…
  ☆17Updated last week