Zhong-Lab-UCSD / HiCtoolLinks
Python library for processing and visualizing Hi-C data
☆20Updated 5 years ago
Alternatives and similar repositories for HiCtool
Users that are interested in HiCtool are comparing it to the libraries listed below
Sorting:
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- ☆12Updated 6 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- ☆38Updated 2 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- A Python implementation for BH-FDR and HiCCUPS☆53Updated 8 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆21Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆40Updated last year
- ☆22Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆22Updated last year
- ☆37Updated 6 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 3 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 4 months ago
- ☆20Updated 3 years ago
- scripts for analyzing the CVDC data.☆20Updated 6 years ago
- Micro DNA identification☆24Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year