Zhong-Lab-UCSD / HiCtoolLinks
Python library for processing and visualizing Hi-C data
☆20Updated 5 years ago
Alternatives and similar repositories for HiCtool
Users that are interested in HiCtool are comparing it to the libraries listed below
Sorting:
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- ☆11Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated 3 months ago
- ☆24Updated 4 years ago
- A Python implementation of the original DI domain caller