Zhong-Lab-UCSD / HiCtool
Python library for processing and visualizing Hi-C data
☆20Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for HiCtool
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- R package to evaluate the reproducibility of Hi-C data☆25Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- ☆10Updated 5 years ago
- ☆24Updated 3 years ago
- scripts for analyzing the CVDC data.☆17Updated 4 years ago
- 4C-seq processing pipeline☆22Updated 7 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 9 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- SingleCell Nanopore sequencing data analysis☆52Updated last month
- A Python implementation for BH-FDR and HiCCUPS☆41Updated 2 weeks ago
- ☆17Updated 7 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆13Updated last year
- Tutorial Website☆53Updated 3 years ago
- ☆33Updated last year
- ☆24Updated 2 years ago
- Quantitation and visualization of differential alternative splicing events☆9Updated last year
- Benchmarking long-read RNA-seq analysis tools☆25Updated 9 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 7 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- lncRNA-screen☆26Updated 7 years ago