Python library for processing and visualizing Hi-C data
☆20May 31, 2020Updated 5 years ago
Alternatives and similar repositories for HiCtool
Users that are interested in HiCtool are comparing it to the libraries listed below
Sorting:
- ☆25May 14, 2021Updated 4 years ago
- an efficient Hi-C data processing pipeline☆17Mar 26, 2024Updated last year
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆189Jul 13, 2020Updated 5 years ago
- HiC uniform processing pipeline☆63Nov 8, 2023Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆15Feb 6, 2026Updated last month
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Apr 11, 2024Updated last year
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 8 years ago
- ☆13Jan 18, 2017Updated 9 years ago
- A collection of tools for Hi-C data analysis☆633Mar 15, 2026Updated last week
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Aug 6, 2024Updated last year
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Aug 28, 2015Updated 10 years ago
- ☆12Jul 19, 2019Updated 6 years ago
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆29Aug 13, 2021Updated 4 years ago
- chia pet analysis software☆25Jan 17, 2019Updated 7 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.☆15Oct 30, 2024Updated last year
- ☆46Jul 6, 2017Updated 8 years ago
- ☆12Aug 28, 2020Updated 5 years ago
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- ☆16Aug 14, 2024Updated last year
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆204Feb 27, 2026Updated 3 weeks ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 9 months ago
- circos pipeline☆20May 8, 2021Updated 4 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Oct 23, 2024Updated last year
- FAN-C: Framework for the ANalysis of C-like data☆122Mar 13, 2024Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Mar 7, 2026Updated 2 weeks ago
- ☆78Jun 12, 2020Updated 5 years ago
- ☆13Jul 26, 2022Updated 3 years ago
- ☆24Feb 24, 2025Updated last year
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆31Jul 20, 2022Updated 3 years ago
- bioinfo workflow based on snakemake☆14Feb 22, 2024Updated 2 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆431Mar 28, 2024Updated last year