XiaoTaoWang / HiC_pipelineLinks
An easy-to-use Hi-C data processing software supporting distributed computation.
☆61Updated last year
Alternatives and similar repositories for HiC_pipeline
Users that are interested in HiC_pipeline are comparing it to the libraries listed below
Sorting:
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 8 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Docker for 4DN Hi-C processing pipeline☆61Updated 9 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆69Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 9 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆47Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- HiC uniform processing pipeline☆60Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆74Updated last month
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last week
- Package for analysis and characterization of differential TADs☆25Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- ☆58Updated last month
- Software for Quantifying Interspersed Repeat Expression☆61Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- ☆24Updated 4 years ago
- A Python implementation for BH-FDR and HiCCUPS☆50Updated 4 months ago
- ☆50Updated 6 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆115Updated last week
- Tutorial Website☆59Updated 4 years ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago