An easy-to-use Hi-C data processing software supporting distributed computation.
☆62Aug 6, 2024Updated last year
Alternatives and similar repositories for HiC_pipeline
Users that are interested in HiC_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 3 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- Genome-wide contact analysis using sklearn☆74Mar 23, 2024Updated 2 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated 8 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆76Oct 21, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- an efficient Hi-C data processing pipeline☆17Mar 26, 2024Updated 2 years ago
- Docker for 4DN Hi-C processing pipeline☆61Nov 26, 2024Updated last year
- A Python implementation of the original DI domain caller☆12Aug 2, 2020Updated 5 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆128Feb 3, 2026Updated last month
- FAN-C: Framework for the ANalysis of C-like data☆122Mar 13, 2024Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python