XiaoTaoWang / HiC_pipelineLinks
An easy-to-use Hi-C data processing software supporting distributed computation.
☆62Updated last year
Alternatives and similar repositories for HiC_pipeline
Users that are interested in HiC_pipeline are comparing it to the libraries listed below
Sorting:
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Updated 8 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Docker for 4DN Hi-C processing pipeline☆60Updated last year
- Genome-wide contact analysis using sklearn☆71Updated last year
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 3 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆75Updated 4 months ago
- ☆59Updated 4 months ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- HiC uniform processing pipeline☆61Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- scripts for analyzing the CVDC data.☆20Updated 6 years ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆49Updated 6 years ago
- Package for analysis and characterization of differential TADs☆26Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- ☆25Updated 4 years ago
- A self-contained repository of all code needed for SPRITE analysis☆21Updated 4 years ago
- ☆63Updated 2 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆72Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago