Visualize and annotate genomic coverage with ggplot2
☆271Jan 24, 2025Updated last year
Alternatives and similar repositories for ggcoverage
Users that are interested in ggcoverage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A grammar of graphics for comparative genomics☆774Jul 3, 2026Updated 2 weeks ago
- Visualizing transcript structure and annotation using ggplot2☆169Aug 24, 2024Updated last year
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆596Jul 5, 2026Updated 2 weeks ago
- Analyzing and visualizing KEGG information using the grammar of graphics☆246Oct 14, 2025Updated 9 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆865May 2, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Download FASTQ files from SRA or ENA repositories.☆396May 16, 2026Updated 2 months ago
- Generate IGV style locus tracks from bigWig files in R☆189Oct 28, 2024Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- A library for creating complex UpSet plots with ggplot2 geoms☆569Sep 23, 2025Updated 9 months ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆107Jul 8, 2026Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 2 weeks ago
- A list of interesting genome browser and genome visualization programs☆1,097Jul 5, 2026Updated 2 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆349Apr 7, 2025Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆87May 27, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆198Sep 22, 2020Updated 5 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆113Jun 6, 2021Updated 5 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Genome browser and variant annotation☆395Jun 25, 2026Updated 3 weeks ago
- bioinformatics toolkit in rust☆107Updated this week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆187Jul 1, 2026Updated 2 weeks ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 8 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆162Apr 13, 2026Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆571Jul 13, 2024Updated 2 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- Structural variant toolkit for VCFs☆420May 22, 2026Updated last month
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆208Nov 23, 2025Updated 7 months ago
- ☆30Aug 1, 2023Updated 2 years ago
- long read RNA-seq quantification☆116Updated this week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆268Jul 11, 2026Updated last week
- Align proteins to genomes with splicing and frameshift☆408Jan 5, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ggpie - A ggplot2 extension to create pie, donut and rose pie plot☆50Oct 30, 2023Updated 2 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆432Jun 24, 2026Updated 3 weeks ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆372Jul 6, 2026Updated 2 weeks ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆42Jul 1, 2026Updated 2 weeks ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 8 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- ☆364Updated this week