Visualize and annotate genomic coverage with ggplot2
☆272Jan 24, 2025Updated last year
Alternatives and similar repositories for ggcoverage
Users that are interested in ggcoverage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A grammar of graphics for comparative genomics☆760Feb 23, 2026Updated 2 months ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆588Jan 13, 2026Updated 3 months ago
- Visualizing transcript structure and annotation using ggplot2☆167Aug 24, 2024Updated last year
- ggpie - A ggplot2 extension to create pie, donut and rose pie plot☆50Oct 30, 2023Updated 2 years ago
- Analyzing and visualizing KEGG information using the grammar of graphics☆241Oct 14, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆847Apr 24, 2026Updated last week
- Download FASTQ files from SRA or ENA repositories.☆385Feb 1, 2026Updated 3 months ago
- Generate IGV style locus tracks from bigWig files in R☆185Oct 28, 2024Updated last year
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆99Dec 21, 2025Updated 4 months ago
- A library for creating complex UpSet plots with ggplot2 geoms☆555Sep 23, 2025Updated 7 months ago
- A list of interesting genome browser and genome visualization programs☆1,067Apr 18, 2026Updated last week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆83Jan 20, 2026Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆195Sep 22, 2020Updated 5 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- bioinformatics toolkit in rust☆105Feb 15, 2026Updated 2 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆182Apr 1, 2026Updated last month
- Efficient querying of biological databases☆44Oct 27, 2025Updated 6 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Structural variant toolkit for VCFs☆406Mar 21, 2026Updated last month
- ☆155Apr 13, 2026Updated 2 weeks ago
- ☆30Aug 1, 2023Updated 2 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 5 months ago
- This is the standalone version of the EviAnn pipeline☆144Apr 24, 2026Updated last week
- Align proteins to genomes with splicing and frameshift☆400Jan 5, 2026Updated 3 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆410Apr 1, 2026Updated last month
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆250Apr 23, 2026Updated last week
- long read RNA-seq quantification☆109Mar 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆367Jun 6, 2025Updated 10 months ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 5 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆205Apr 20, 2026Updated last week
- Transfer coordinates across genomes☆23Apr 23, 2026Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆102Apr 9, 2026Updated 3 weeks ago