rpetit3 / fastq-dlLinks
Download FASTQ files from SRA or ENA repositories.
☆344Updated 3 months ago
Alternatives and similar repositories for fastq-dl
Users that are interested in fastq-dl are comparing it to the libraries listed below
Sorting:
- Tool for plotting sequencing data along genomic coordinates.☆319Updated 3 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆239Updated last week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆219Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆181Updated 2 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆223Updated 2 months ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated last week
- Full-Length Alternative Isoform analysis of RNA☆236Updated last week
- Nextflow training material☆196Updated this week
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆263Updated 2 weeks ago
- Web application to explore the Sequence Read Archive.☆217Updated 2 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆274Updated last month
- Genome browser and variant annotation☆381Updated 2 months ago
- RNA-seq workflow using STAR and DESeq2☆346Updated 3 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆259Updated 2 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆341Updated last week
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated 2 years ago
- ☆275Updated 10 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆242Updated 2 months ago
- Step-by-step analysis pipeline for RNA-seq data☆142Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆438Updated 9 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆210Updated 2 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆211Updated 2 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆176Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆246Updated 2 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆185Updated this week
- Generate IGV style locus tracks from bigWig files in R☆171Updated 11 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆379Updated last week