lh3 / gffioLinks
☆32Updated 2 years ago
Alternatives and similar repositories for gffio
Users that are interested in gffio are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- General purpose utility related to GAF files☆28Updated last week
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆21Updated 2 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 5 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- Convert HAL to VG☆22Updated 9 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆29Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- the pangenome graph evaluator☆26Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- transposable element typing pipeline☆18Updated last year
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 11 months ago
- Differential k-mer analysis☆36Updated last year
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆42Updated 3 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated last week