lh3 / gffioLinks
☆32Updated 2 years ago
Alternatives and similar repositories for gffio
Users that are interested in gffio are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- transposable element typing pipeline☆18Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- ☆42Updated 3 months ago
- ☆21Updated this week
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- Convert HAL to VG☆22Updated 10 months ago
- General purpose utility related to GAF files☆28Updated 3 weeks ago
- ☆17Updated last year
- ☆28Updated 8 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- A comparative genome scaffolding tool☆17Updated 6 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 weeks ago
- ☆16Updated 3 years ago
- ☆14Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 weeks ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago