☆32Dec 16, 2022Updated 3 years ago
Alternatives and similar repositories for gffio
Users that are interested in gffio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- Interactive phylogenetic tree viewer/editor☆49Jul 12, 2023Updated 3 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- SRF: Satellite Repeat Finder☆108Jan 8, 2024Updated 2 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 10 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 10 months ago
- ☆19May 10, 2023Updated 3 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆60Aug 6, 2023Updated 3 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆23Updated this week
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- ☆29Sep 28, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 7 years ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆32Aug 18, 2026Updated 2 weeks ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Statistics and analysis for variation graphs☆53Dec 17, 2024Updated last year
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Aug 1, 2026Updated last month
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 9 months ago