lh3 / gffioLinks
☆32Updated 2 years ago
Alternatives and similar repositories for gffio
Users that are interested in gffio are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- ☆45Updated 2 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- General purpose utility related to GAF files☆29Updated last month
- recompute GFA link overlaps☆25Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Differential k-mer analysis☆37Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- Long-read aligner to pangenome graphs☆27Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- ☆28Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Benchmark structural variant calls against a reference set☆17Updated 11 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- ☆22Updated last month
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago