dzhang32 / ggtranscript

Related projects ⓘ

Alternatives and complementary repositories for ggtranscript

• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆139Updated last week
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆75Updated 11 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆101Updated 4 months ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆98Updated 2 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆45Updated last month
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆114Updated 2 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆56Updated 6 months ago
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆65Updated last week
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆78Updated 3 months ago
• guigolab / ggsashimi
  Command-line tool for the visualization of splicing events across multiple samples
  ☆121Updated 4 months ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆85Updated 3 months ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆106Updated 2 years ago
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆66Updated this week
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆52Updated last year
• MangiolaLaboratory / sccomp
  Testing differences in cell type proportions from single-cell data.
  ☆93Updated 2 weeks ago
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆53Updated 3 months ago
• robinweide / GENOVA
  GENome Organisation Visual Analytics
  ☆70Updated 7 months ago
• quinlan-lab / sllobs-biostats
  ☆70Updated 2 years ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆63Updated this week
• morrislab / qapa
  RNA-seq Quantification of Alternative Polyadenylation
  ☆42Updated last year
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆70Updated 11 months ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆64Updated 5 years ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆46Updated 5 years ago
• BSSeeker / BSseeker2
  A versatile aligning pipeline for bisulfite sequencing data
  ☆61Updated 6 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆53Updated 3 years ago
• guoweilong / cgmaptools
  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
  ☆62Updated 10 months ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆227Updated 5 months ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆187Updated last year
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆109Updated last month
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆61Updated 6 months ago