Visualizing transcript structure and annotation using ggplot2
☆167Aug 24, 2024Updated last year
Alternatives and similar repositories for ggtranscript
Users that are interested in ggtranscript are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆128Apr 10, 2026Updated 3 weeks ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆220Updated this week
- Technology agnostic long read analysis pipeline for transcriptomes☆158Jan 25, 2024Updated 2 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆238Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆262Apr 24, 2026Updated last week
- ☆295Mar 4, 2026Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆68Jan 19, 2026Updated 3 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆17Feb 21, 2024Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Automate package and project setup for Bioconductor packages☆56Mar 31, 2026Updated last month
- iread☆25Jul 16, 2021Updated 4 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆35Nov 8, 2023Updated 2 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Feb 28, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Visualize and annotate genomic coverage with ggplot2☆272Jan 24, 2025Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆66Oct 11, 2024Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 7 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- ☆17Jul 19, 2024Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- ☆160Mar 16, 2026Updated last month
- ☆39Apr 25, 2023Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 2 months ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆15Mar 27, 2026Updated last month
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆298Nov 6, 2025Updated 5 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆33Apr 23, 2026Updated last week
- Command-line tool for the visualization of splicing events across multiple samples☆140Jun 28, 2024Updated last year
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆164Mar 24, 2026Updated last month
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 4 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆25Dec 10, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 3 years ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆570Apr 13, 2026Updated 2 weeks ago
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated last month
- ☆18May 31, 2024Updated last year
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆588Jan 13, 2026Updated 3 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Nov 20, 2025Updated 5 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆236Jul 9, 2025Updated 9 months ago