Alternatives and similar repositories for ggtranscript

Users that are interested in ggtranscript are comparing it to the libraries listed below

• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆172Updated 11 months ago
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆87Updated 9 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆118Updated 2 weeks ago
• guigolab / ggsashimi
  Command-line tool for the visualization of splicing events across multiple samples
  ☆131Updated last year
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆125Updated 3 years ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆99Updated 11 months ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 3 weeks ago
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆82Updated 9 months ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆63Updated last year
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆74Updated last week
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆114Updated 2 weeks ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆194Updated 2 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 4 months ago
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆157Updated 3 years ago
• PMBio / peer
  A factor analysis package
  ☆102Updated 13 years ago
• quinlan-lab / sllobs-biostats
  ☆73Updated 3 years ago
• ncbi / TPMCalculator
  TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
  ☆131Updated last year
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated last week
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆60Updated 5 years ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆115Updated 2 years ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆264Updated 9 months ago
• jwfoley / bioanalyzeR
  R tools for Agilent electrophoresis data
  ☆46Updated 2 years ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆49Updated 6 years ago
• csf-ngs / fastqc
  csf fork of fastqc for usage on selected reads of unaligned bam file
  ☆48Updated 12 years ago
• fallerlab / ARF
  Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions
  ☆12Updated 3 months ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆121Updated 5 years ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆34Updated 6 years ago
• robinweide / GENOVA
  GENome Organisation Visual Analytics
  ☆81Updated 9 months ago
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆103Updated last month