Visualizing transcript structure and annotation using ggplot2
☆165Aug 24, 2024Updated last year
Alternatives and similar repositories for ggtranscript
Users that are interested in ggtranscript are comparing it to the libraries listed below
Sorting:
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Feb 5, 2026Updated 3 weeks ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆204Updated this week
- Technology agnostic long read analysis pipeline for transcriptomes☆156Jan 25, 2024Updated 2 years ago
- ☆291Feb 11, 2026Updated 2 weeks ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆227Feb 20, 2026Updated last week
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Feb 21, 2024Updated 2 years ago
- iread☆25Jul 16, 2021Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆252Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆66Jan 19, 2026Updated last month
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- Visualize and annotate genomic coverage with ggplot2☆271Jan 24, 2025Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆31Mar 18, 2025Updated 11 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Feb 28, 2023Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- ☆158May 23, 2025Updated 9 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- ☆17Jul 19, 2024Updated last year
- ☆39Apr 25, 2023Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Nov 25, 2025Updated 3 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆161Dec 24, 2025Updated 2 months ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆183Oct 28, 2024Updated last year
- Full-length transcriptome splicing and mutation analysis☆86Jun 24, 2024Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Dec 10, 2025Updated 2 months ago
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 2 weeks ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆100Updated this week
- Command-line tool for the visualization of splicing events across multiple samples☆137Jun 28, 2024Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆293Nov 6, 2025Updated 3 months ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 2 months ago
- ☆18Apr 18, 2024Updated last year
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆576Jan 13, 2026Updated last month