Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
☆415Apr 1, 2026Updated last month
Alternatives and similar repositories for igv-reports
Users that are interested in igv-reports are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 7 months ago
- Script to automatically create and run IGV snapshot batchscripts☆142Jan 13, 2023Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆851May 2, 2026Updated 3 weeks ago
- Structural variant toolkit for VCFs☆410Mar 21, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Per-base per-nucleotide depth analysis☆149May 9, 2026Updated 2 weeks ago
- Genome browser and variant annotation☆396May 12, 2026Updated last week
- Read-based phasing of genomic variants, also called haplotype assembly☆416Dec 31, 2025Updated 4 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 11 months ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70May 9, 2026Updated 2 weeks ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 5 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆124Oct 9, 2025Updated 7 months ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆720May 13, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 3 months ago
- An accurate GFF3/GTF lift over pipeline☆537Aug 1, 2023Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆170May 6, 2026Updated 2 weeks ago
- cython + htslib == fast VCF and BCF processing☆441May 14, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,450May 14, 2026Updated last week
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- A complete diploid human genome☆149May 7, 2026Updated 2 weeks ago
- The next version of bwa-mem☆834Oct 15, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Structural variation caller using third generation sequencing☆654Updated this week
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆213Mar 16, 2026Updated 2 months ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆884Jul 10, 2024Updated last year
- using all the bits for echt rapid variant annotation and filtering☆160Apr 30, 2026Updated 3 weeks ago
- Performant Pythonic GenomicRanges☆494Apr 23, 2026Updated last month
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Apr 16, 2026Updated last month
- A list of interesting genome browser and genome visualization programs☆1,076May 15, 2026Updated last week
- A declarative interactive genomics visualization library for Python.☆243Nov 24, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- IGV Web App☆125May 6, 2026Updated 2 weeks ago
- Download FASTQ files from SRA or ENA repositories.☆387May 16, 2026Updated last week
- 🧬 gget enables efficient querying of genomic reference databases☆1,123May 15, 2026Updated last week
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆160Feb 12, 2026Updated 3 months ago
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404May 1, 2026Updated 3 weeks ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,361Apr 24, 2026Updated 3 weeks ago