igvteam / igv-reportsLinks
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
☆395Updated last month
Alternatives and similar repositories for igv-reports
Users that are interested in igv-reports are comparing it to the libraries listed below
Sorting:
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆257Updated 3 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- parallel fastq-dump wrapper☆301Updated 2 years ago
- Genome browser and variant annotation☆387Updated 2 months ago
- Annotation and Ranking of Structural Variation☆276Updated 2 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated 3 weeks ago
- Full-Length Alternative Isoform analysis of RNA☆245Updated 2 weeks ago
- Structural variant toolkit for VCFs☆393Updated 3 weeks ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆330Updated 7 months ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 5 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated 3 weeks ago
- ☆297Updated 2 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆273Updated last month
- RNA-seq workflow using STAR and DESeq2☆351Updated 2 weeks ago
- Documentation for the ANNOVAR software☆245Updated 5 months ago
- An accurate GFF3/GTF lift over pipeline☆516Updated 2 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆439Updated 4 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆499Updated last month
- Download FASTQ files from SRA or ENA repositories.☆359Updated 3 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 7 months ago
- TransDecoder source☆301Updated 3 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆449Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆395Updated 2 weeks ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated 3 weeks ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆286Updated 4 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆290Updated last month