igvteam / igv-reportsLinks
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
☆382Updated 2 weeks ago
Alternatives and similar repositories for igv-reports
Users that are interested in igv-reports are comparing it to the libraries listed below
Sorting:
- Plot structural variant signals from many BAMs and CRAMs☆553Updated last year
- Full-Length Alternative Isoform analysis of RNA☆236Updated 2 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆259Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated 2 years ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Annotation and Ranking of Structural Variation☆263Updated 2 weeks ago
- Structural variant toolkit for VCFs☆380Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆246Updated 2 weeks ago
- Genome browser and variant annotation☆383Updated 2 months ago
- Count bases in BAM/CRAM files☆318Updated 3 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆277Updated 8 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆326Updated 4 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆185Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆224Updated 3 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆239Updated 2 weeks ago
- An accurate GFF3/GTF lift over pipeline☆507Updated 2 years ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆274Updated last month
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆341Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆241Updated 4 years ago
- TransDecoder source☆298Updated last week
- An overview of all nanopack tools☆270Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆146Updated 10 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆272Updated 3 weeks ago
- Nanopore demultiplexing, QC and alignment pipeline☆211Updated 3 months ago
- A structural variation pipeline for short-read sequencing☆194Updated this week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆242Updated 2 months ago
- Bayesian haplotype-based mutation calling☆319Updated last week
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago
- Download FASTQ files from SRA or ENA repositories.☆344Updated 3 months ago