Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
☆436Sep 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for igv-reports
Users that are interested in igv-reports are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 11 months ago
- Script to automatically create and run IGV snapshot batchscripts☆143Jan 13, 2023Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆877May 2, 2026Updated 4 months ago
- Structural variant toolkit for VCFs☆423Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 4 months ago
- Genome browser and variant annotation☆399Aug 24, 2026Updated 3 weeks ago
- Read-based phasing of genomic variants, also called haplotype assembly☆430Sep 14, 2026Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Sep 14, 2026Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated 2 months ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆735Updated this week
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 9 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bayesian haplotype-based mutation calling☆325Feb 13, 2026Updated 7 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- An accurate GFF3/GTF lift over pipeline☆557Aug 1, 2023Updated 3 years ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- cython + htslib == fast VCF and BCF processing☆449Sep 10, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,492Updated this week
- A tool for somatic structural variant calling using long reads☆179Jun 8, 2026Updated 3 months ago
- A complete diploid human genome☆160Aug 10, 2026Updated last month
- The next version of bwa-mem☆863Oct 15, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Structural variation caller using third generation sequencing☆679Sep 10, 2026Updated last week
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆219Jun 23, 2026Updated 2 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Performant Pythonic GenomicRanges☆491Apr 23, 2026Updated 4 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆901Sep 10, 2026Updated last week
- using all the bits for echt rapid variant annotation and filtering☆162Jul 22, 2026Updated 2 months ago
- A declarative interactive genomics visualization library for Python.☆242Nov 24, 2025Updated 9 months ago
- IGV Web App☆129Sep 11, 2026Updated last week
- A list of interesting genome browser and genome visualization programs☆1,107Jul 21, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- vcfdist: Accurately benchmarking phased variant calls☆90Aug 28, 2026Updated 3 weeks ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 7 months ago
- SRF: Satellite Repeat Finder☆109Jan 8, 2024Updated 2 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,430Sep 10, 2026Updated last week
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 3 months ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,200Updated this week
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆334Sep 9, 2026Updated last week