igvteam / igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
☆355Updated 3 months ago
Alternatives and similar repositories for igv-reports:
Users that are interested in igv-reports are comparing it to the libraries listed below
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 8 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆264Updated last year
- parallel fastq-dump wrapper☆288Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated last week
- Full-Length Alternative Isoform analysis of RNA☆221Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆210Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Genome browser and variant annotation☆296Updated last month
- Annotation and Ranking of Structural Variation☆246Updated 2 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆244Updated last month
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆246Updated last week
- A structural variation pipeline for short-read sequencing☆183Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆208Updated 3 weeks ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆310Updated 9 months ago
- Count bases in BAM/CRAM files☆314Updated 3 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆396Updated 11 months ago
- RNA-seq workflow using STAR and DESeq2☆339Updated 7 months ago
- ☆238Updated 9 months ago
- Toolset for SV simulation, comparison and filtering☆374Updated last year
- Documentation for the ANNOVAR software☆240Updated 2 weeks ago
- Download FASTQ files from SRA or ENA repositories.☆309Updated 5 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆209Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆215Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated last week
- Application for making ENCODE Blacklists☆295Updated 3 years ago
- An accurate GFF3/GTF lift over pipeline☆472Updated last year
- ☆264Updated last month