igvteam / igv-reportsLinks
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
☆386Updated last week
Alternatives and similar repositories for igv-reports
Users that are interested in igv-reports are comparing it to the libraries listed below
Sorting:
- Plot structural variant signals from many BAMs and CRAMs☆555Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated 2 years ago
- parallel fastq-dump wrapper☆299Updated 2 years ago
- Full-Length Alternative Isoform analysis of RNA☆237Updated last week
- Genome browser and variant annotation☆385Updated 2 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆344Updated last week
- RNA-seq workflow using STAR and DESeq2☆346Updated last month
- Structural variant toolkit for VCFs☆384Updated 3 weeks ago
- Annotation and Ranking of Structural Variation☆263Updated 3 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆248Updated last month
- Documentation for the ANNOVAR software☆245Updated 3 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆225Updated 3 months ago
- An accurate GFF3/GTF lift over pipeline☆511Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆240Updated last week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆245Updated 3 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆282Updated 8 months ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated 3 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆327Updated 5 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆266Updated last month
- Download FASTQ files from SRA or ENA repositories.☆348Updated 4 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆423Updated last year
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆278Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆443Updated 10 months ago
- ☆293Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆242Updated 4 years ago
- TransDecoder source☆298Updated last month
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated 3 weeks ago