Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
☆404Feb 3, 2026Updated last month
Alternatives and similar repositories for igv-reports
Users that are interested in igv-reports are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 5 months ago
- Script to automatically create and run IGV snapshot batchscripts☆142Jan 13, 2023Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆831Feb 10, 2026Updated last month
- Structural variant toolkit for VCFs☆401Updated this week
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated last week
- Genome browser and variant annotation☆392Oct 30, 2025Updated 4 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆409Dec 31, 2025Updated 2 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 9 months ago
- vembrane filters VCF records using python expressions☆69Updated this week
- The D4 Quantitative Data Format☆169Nov 28, 2025Updated 3 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆123Oct 9, 2025Updated 5 months ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆712Mar 12, 2026Updated last week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 4 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆166Mar 12, 2026Updated last week
- cython + htslib == fast VCF and BCF processing☆435Feb 23, 2026Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,430Mar 12, 2026Updated last week
- A complete diploid human genome☆145Mar 9, 2026Updated 2 weeks ago
- The next version of bwa-mem☆824Oct 15, 2025Updated 5 months ago
- Structural variation caller using third generation sequencing☆639Mar 10, 2026Updated last week
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆212Mar 16, 2026Updated last week
- Jasmine: SV Merging Across Samples☆244Dec 20, 2024Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆73Mar 16, 2026Updated last week
- Long read aligner☆114May 26, 2023Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆867Jul 10, 2024Updated last year
- using all the bits for echt rapid variant annotation and filtering☆154Feb 18, 2026Updated last month
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated last month
- A list of interesting genome browser and genome visualization programs☆1,056Updated this week
- A declarative interactive genomics visualization library for Python.☆243Nov 24, 2025Updated 3 months ago
- IGV Web App☆128Mar 11, 2026Updated last week
- Download FASTQ files from SRA or ENA repositories.☆376Feb 1, 2026Updated last month
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated last month
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,308Updated this week
- annotate a VCF with other VCFs/BEDs/tabixed files☆399Aug 30, 2025Updated 6 months ago