igvteam / igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
☆360Updated 3 months ago
Alternatives and similar repositories for igv-reports:
Users that are interested in igv-reports are comparing it to the libraries listed below
- Plot structural variant signals from many BAMs and CRAMs☆539Updated 9 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆251Updated last year
- Annotation and Ranking of Structural Variation☆250Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆217Updated 2 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated 2 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆210Updated this week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated 2 months ago
- parallel fastq-dump wrapper☆290Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆265Updated last year
- Full-Length Alternative Isoform analysis of RNA☆224Updated this week
- RNA-seq workflow using STAR and DESeq2☆338Updated 8 months ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆240Updated 2 years ago
- Genome browser and variant annotation☆300Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆226Updated 4 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆246Updated 2 months ago
- Documentation for the ANNOVAR software☆242Updated 3 weeks ago
- Count bases in BAM/CRAM files☆315Updated 3 years ago
- Download FASTQ files from SRA or ENA repositories.☆319Updated 3 weeks ago
- ATAC-seq peak-calling and QC analysis pipeline☆200Updated last month
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆386Updated 4 months ago
- Application for making ENCODE Blacklists☆296Updated 3 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆165Updated this week
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆315Updated 10 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆248Updated last month
- Structural variant toolkit for VCFs☆351Updated last week
- TransDecoder source☆288Updated 6 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆209Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆198Updated 2 weeks ago
- Web application to explore the Sequence Read Archive.☆216Updated 2 weeks ago