Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
☆435Aug 25, 2026Updated last week
Alternatives and similar repositories for igv-reports
Users that are interested in igv-reports are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 10 months ago
- Script to automatically create and run IGV snapshot batchscripts☆143Jan 13, 2023Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆572Jul 13, 2024Updated 2 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆872May 2, 2026Updated 3 months ago
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago
- Genome browser and variant annotation☆398Aug 24, 2026Updated last week
- Read-based phasing of genomic variants, also called haplotype assembly☆428Jul 4, 2026Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Aug 25, 2026Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated last month
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆734Aug 21, 2026Updated last week
- The D4 Quantitative Data Format☆175Nov 28, 2025Updated 9 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Bayesian haplotype-based mutation calling☆326Feb 13, 2026Updated 6 months ago
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- Jasmine: SV Merging Across Samples☆259Dec 20, 2024Updated last year
- cython + htslib == fast VCF and BCF processing☆446Jun 25, 2026Updated 2 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,489Updated this week
- A tool for somatic structural variant calling using long reads☆178Jun 8, 2026Updated 2 months ago
- The next version of bwa-mem☆859Oct 15, 2025Updated 10 months ago
- A complete diploid human genome☆158Aug 10, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Structural variation caller using third generation sequencing☆677Jul 20, 2026Updated last month
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆217Jun 23, 2026Updated 2 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆898Updated this week
- Performant Pythonic GenomicRanges☆492Apr 23, 2026Updated 4 months ago
- using all the bits for echt rapid variant annotation and filtering☆162Jul 22, 2026Updated last month
- A declarative interactive genomics visualization library for Python.☆242Nov 24, 2025Updated 9 months ago
- IGV Web App☆129Aug 21, 2026Updated last week
- A list of interesting genome browser and genome visualization programs☆1,103Jul 21, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆164Feb 12, 2026Updated 6 months ago
- vcfdist: Accurately benchmarking phased variant calls☆89Updated this week
- SRF: Satellite Repeat Finder☆108Jan 8, 2024Updated 2 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,423Jul 30, 2026Updated last month
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 2 months ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,193Updated this week
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆333Jul 20, 2026Updated last month