Alternatives and similar repositories for trackplot

Users that are interested in trackplot are comparing it to the libraries listed below

• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆128Updated 3 years ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆165Updated last year
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆198Updated 2 years ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆120Updated 3 years ago
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆107Updated 2 weeks ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆123Updated 2 months ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆178Updated last month
• tavareshugo / tutorial_DESeq2_contrasts
  ☆65Updated last year
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆117Updated 3 months ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆138Updated 5 years ago
• yupenghe / methylpy
  WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
  ☆147Updated 2 years ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆276Updated 3 months ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆222Updated 2 months ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆218Updated 6 months ago
• Xinglab / rmats2sashimiplot
  ☆158Updated 8 months ago
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆90Updated last year
• xryanglab / RiboCode
  release version
  ☆58Updated 3 years ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆98Updated last year
• guigolab / ggsashimi
  Command-line tool for the visualization of splicing events across multiple samples
  ☆136Updated last year
• harvardinformatics / ATAC-seq
  ☆145Updated 7 years ago
• VanLoo-lab / ascat
  ASCAT R package
  ☆197Updated 4 months ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆49Updated 7 years ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆237Updated 2 months ago
• haowenz / chromap
  Fast alignment and preprocessing of chromatin profiles
  ☆211Updated 2 weeks ago
• crazyhottommy / pyflow-ChIPseq
  a snakemake pipeline to process ChIP-seq files from GEO or in-house
  ☆131Updated last month
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆231Updated 8 months ago
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆88Updated 5 years ago
• vaquerizaslab / fanc
  FAN-C: Framework for the ANalysis of C-like data
  ☆121Updated last year
• epi2me-labs / wf-single-cell
  ☆104Updated 2 weeks ago