karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
☆377Jul 6, 2026Updated 3 months ago
Alternatives and similar repositories for karyoploteR
Users that are interested in karyoploteR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- ☆202Sep 22, 2020Updated 6 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆905Oct 3, 2026Updated 2 weeks ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆879May 2, 2026Updated 5 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆267Jun 17, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Genome data visualizations☆227Jan 10, 2026Updated 9 months ago
- 📊 Circular and Rectangular Manhattan Plot☆648May 8, 2026Updated 5 months ago
- Structural variation caller using third generation sequencing☆684Sep 10, 2026Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆603Jul 5, 2026Updated 3 months ago
- A list of interesting genome browser and genome visualization programs☆1,111Updated this week
- Tools to work with variant call format files☆270Jun 8, 2026Updated 4 months ago
- ☆371Jul 18, 2026Updated 2 months ago
- BAM Statistics, Feature Counting and Annotation☆155Oct 2, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python library to facilitate genome assembly, annotation, and comparative genomics☆932Sep 19, 2026Updated 3 weeks ago
- A grammar of graphics for comparative genomics☆791Oct 5, 2026Updated last week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆504Jul 7, 2026Updated 3 months ago
- Publication-ready volcano plots with enhanced colouring and labeling☆471Aug 31, 2026Updated last month
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,597Sep 24, 2026Updated 3 weeks ago
- Circular visualization in R☆1,027Nov 11, 2023Updated 2 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆202Jan 30, 2026Updated 8 months ago
- Extensive de-novo TE Annotator☆472Sep 10, 2026Updated last month
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆31Apr 28, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 3 months ago
- Make colorful identity heatmaps of genomic sequence☆140May 24, 2024Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆220Jun 30, 2026Updated 3 months ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆533Sep 27, 2023Updated 3 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆75Dec 4, 2024Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆175Jun 9, 2026Updated 4 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 4 months ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆686Oct 2, 2026Updated 2 weeks ago
- Jasmine: SV Merging Across Samples☆262Dec 20, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Text Only Genome Viewer!☆251Sep 30, 2026Updated 2 weeks ago
- Send R code/R scripts/shell commands to LSF cluster without leaving R☆27Mar 14, 2025Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,444Oct 7, 2026Updated last week
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆328Apr 8, 2024Updated 2 years ago
- Make Complex Heatmaps☆1,559Apr 2, 2026Updated 6 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated last year