karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
☆365Jun 6, 2025Updated 10 months ago
Alternatives and similar repositories for karyoploteR
Users that are interested in karyoploteR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆194Sep 22, 2020Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆564Jul 13, 2024Updated last year
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆844Apr 1, 2026Updated 2 weeks ago
- Structural variation caller using third generation sequencing☆647Apr 2, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Genome data visualizations☆222Jan 10, 2026Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- 📊 Circular and Rectangular Manhattan Plot☆630Feb 25, 2026Updated last month
- A list of interesting genome browser and genome visualization programs☆1,062Mar 26, 2026Updated 3 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆899Apr 2, 2026Updated 2 weeks ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆585Jan 13, 2026Updated 3 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆471Apr 10, 2026Updated last week
- A grammar of graphics for comparative genomics☆754Feb 23, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆354Apr 16, 2025Updated last year
- Publication-ready volcano plots with enhanced colouring and labeling☆460Dec 3, 2025Updated 4 months ago
- Synteny and Rearrangement Identifier☆460Mar 17, 2026Updated last month
- Extensive de-novo TE Annotator☆439Apr 5, 2026Updated last week
- Tools to work with variant call format files☆266Feb 23, 2026Updated last month
- BAM Statistics, Feature Counting and Annotation☆154Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,537Mar 31, 2026Updated 2 weeks ago
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆28Updated this week
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Circular visualization in R☆1,011Nov 11, 2023Updated 2 years ago
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆400Aug 30, 2025Updated 7 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆171Feb 9, 2026Updated 2 months ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆200Jan 30, 2026Updated 2 months ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,324Apr 8, 2026Updated last week
- Fast genome analysis from unassembled short reads☆318Apr 8, 2024Updated 2 years ago
- Send R code/R scripts/shell commands to LSF cluster without leaving R☆26Mar 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Make Complex Heatmaps☆1,486Apr 2, 2026Updated 2 weeks ago
- Fast alignment and preprocessing of chromatin profiles☆217Mar 20, 2026Updated 3 weeks ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆569Updated this week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- Sequence-to-graph mapper and graph generator☆475Aug 11, 2025Updated 8 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆293Feb 25, 2026Updated last month
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆672Mar 20, 2026Updated 3 weeks ago