karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
☆379Jul 6, 2026Updated 4 months ago
Alternatives and similar repositories for karyoploteR
Users that are interested in karyoploteR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- ☆202Sep 22, 2020Updated 6 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆907Oct 3, 2026Updated last month
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆879Oct 29, 2026Updated last week
- Genome data visualizations☆227Jan 10, 2026Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python library to facilitate genome assembly, annotation, and comparative genomics☆936Updated this week
- 📊 Circular and Rectangular Manhattan Plot☆646May 8, 2026Updated 5 months ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆604Jul 5, 2026Updated 4 months ago
- ☆371Jul 18, 2026Updated 3 months ago
- A grammar of graphics for comparative genomics☆792Oct 5, 2026Updated last month
- Synteny and Rearrangement Identifier☆498Jul 1, 2026Updated 4 months ago
- A list of interesting genome browser and genome visualization programs☆1,113Oct 30, 2026Updated last week
- Publication-ready volcano plots with enhanced colouring and labeling☆472Aug 31, 2026Updated 2 months ago
- BAM Statistics, Feature Counting and Annotation☆157Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Structural variation caller using third generation sequencing☆686Oct 18, 2026Updated 2 weeks ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆202Jan 30, 2026Updated 9 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆505Jul 7, 2026Updated 3 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Circular visualization in R☆1,028Nov 11, 2023Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆425Dec 1, 2023Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆220Oct 29, 2026Updated last week
- Tools to work with variant call format files☆270Jun 8, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆74Dec 4, 2024Updated last year
- Make colorful identity heatmaps of genomic sequence☆141May 24, 2024Updated 2 years ago
- Visualize and annotate genomic coverage with ggplot2☆274Jan 24, 2025Updated last year
- Structural variant toolkit for VCFs☆428Oct 3, 2026Updated last month
- Jasmine: SV Merging Across Samples☆266Dec 20, 2024Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 4 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,460Oct 7, 2026Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆359Jul 27, 2026Updated 3 months ago
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆231Jul 5, 2025Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆174Jun 9, 2026Updated 4 months ago
- Population-scale genotyping using pangenome graphs☆203Jan 9, 2025Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆423Updated this week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆588Sep 7, 2026Updated last month
- Make Complex Heatmaps☆1,561Apr 2, 2026Updated 7 months ago