➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
☆578Jan 13, 2026Updated last month
Alternatives and similar repositories for gggenes
Users that are interested in gggenes are comparing it to the libraries listed below
Sorting:
- A grammar of graphics for comparative genomics☆744Feb 23, 2026Updated last week
- Gene cluster comparison figure generator☆637Dec 22, 2025Updated 2 months ago
- Creating plasmid maps inside ggplot.☆91Sep 2, 2025Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated 2 weeks ago
- A list of interesting genome browser and genome visualization programs☆1,051Feb 25, 2026Updated last week
- Find clustered hits from a BLAST search☆135Jan 16, 2026Updated last month
- Visualize and annotate genomic coverage with ggplot2☆271Jan 24, 2025Updated last year
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- Synteny and Rearrangement Identifier☆448Apr 29, 2025Updated 10 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆321Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆343Apr 7, 2025Updated 11 months ago
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated 2 months ago
- Visualization and annotation of phylogenetic trees☆918Jan 12, 2026Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆559Feb 14, 2024Updated 2 years ago
- the pangenome graph builder☆481Dec 8, 2025Updated 2 months ago
- Download FASTQ files from SRA or ENA repositories.☆370Feb 1, 2026Updated last month
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆235Sep 18, 2025Updated 5 months ago
- Create a tree using Mash distances☆184Oct 24, 2023Updated 2 years ago
- An updated pipeline for pangenome investigation☆345Jan 15, 2026Updated last month
- Fast genome-wide functional annotation through orthology assignment☆704Jun 18, 2025Updated 8 months ago
- Easily add significance brackets to your ggplots☆611Aug 11, 2024Updated last year
- Visualizing publication-quality multiple sequence alignment using ggplot2☆217Nov 1, 2025Updated 4 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆282Nov 28, 2024Updated last year
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆358Jun 6, 2025Updated 9 months ago
- geNomad: Identification of mobile genetic elements☆291Nov 10, 2025Updated 3 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated last month
- A genome visualization python package for comparative genomics☆396Dec 6, 2025Updated 3 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆187Updated this week
- BEDOPS: high-performance genomic feature operations☆364Apr 29, 2025Updated 10 months ago
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆462Dec 26, 2024Updated last year
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,520Feb 27, 2026Updated last week
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆105Jan 22, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆530Aug 1, 2023Updated 2 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆153Dec 31, 2025Updated 2 months ago
- Reorients assembled microbial sequences☆135Aug 21, 2025Updated 6 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆369Feb 9, 2026Updated 3 weeks ago