Alternatives and similar repositories for RIdeogram:

Users that are interested in RIdeogram are comparing it to the libraries listed below

• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆256Updated last month
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆158Updated 2 years ago
• PF2-pasteur-fr / SARTools
  Statistical Analysis of RNA-Seq Tools
  ☆107Updated last year
• BGI-shenzhen / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆160Updated last year
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆149Updated 6 months ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆100Updated 2 weeks ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆107Updated 4 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆207Updated 3 weeks ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆87Updated last year
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆115Updated 10 months ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆215Updated this week
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆42Updated last year
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆147Updated last month
• Trinotate / Trinotate
  Trinotate source code
  ☆80Updated last year
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆123Updated this week
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆116Updated 3 years ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆111Updated last year
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆80Updated 3 weeks ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆210Updated last week
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆307Updated last year
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆144Updated last year
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆71Updated 3 years ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆116Updated 4 years ago
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆90Updated 2 years ago
• jtlovell / GENESPACE
  ☆199Updated last month
• MariaNattestad / R_for_biologists
  Scripts and data for Plotting in R for Biologists, a video course on YouTube
  ☆58Updated 4 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆197Updated last year