A list of interesting genome browser and genome visualization programs
☆1,056Mar 17, 2026Updated last week
Alternatives and similar repositories for awesome-genome-visualization
Users that are interested in awesome-genome-visualization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A grammar of graphics for comparative genomics☆750Feb 23, 2026Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆562Jul 13, 2024Updated last year
- Gene cluster comparison figure generator☆637Dec 22, 2025Updated 3 months ago
- Synteny and Rearrangement Identifier☆454Mar 17, 2026Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆868Jul 10, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- Genome browser and variant annotation☆392Oct 30, 2025Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆343Apr 7, 2025Updated 11 months ago
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- A genome visualization python package for comparative genomics☆397Dec 6, 2025Updated 3 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆831Feb 10, 2026Updated last month
- the pangenome graph builder☆488Mar 14, 2026Updated last week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆893Mar 12, 2026Updated 2 weeks ago
- Official home of genome aligner based upon notion of Cactus graphs☆664Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆567Jan 13, 2026Updated 2 months ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆585Jan 13, 2026Updated 2 months ago
- Tool for plotting sequencing data along genomic coordinates.☆336Dec 12, 2025Updated 3 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆292Feb 25, 2026Updated last month
- Download FASTQ files from SRA or ENA repositories.☆376Feb 1, 2026Updated last month
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆241Feb 3, 2026Updated last month
- Bioinformatics tool for Locus Visualisation☆162Mar 11, 2026Updated 2 weeks ago
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 7 months ago
- Jasmine: SV Merging Across Samples☆244Dec 20, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- Align proteins to genomes with splicing and frameshift☆396Jan 5, 2026Updated 2 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- A collection of tools for Hi-C data analysis☆633Mar 15, 2026Updated last week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,530Feb 27, 2026Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago
- Fast alignment and preprocessing of chromatin profiles☆215Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆752Mar 18, 2025Updated last year
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Updated this week
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆363Jun 6, 2025Updated 9 months ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,308Updated this week
- Extensive de-novo TE Annotator☆435Mar 12, 2026Updated 2 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆613Feb 18, 2026Updated last month