Alternatives and similar repositories for awesome-genome-visualization

Users that are interested in awesome-genome-visualization are comparing it to the libraries listed below

• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆786Updated 3 weeks ago
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆536Updated 2 weeks ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆488Updated 4 years ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆830Updated last year
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,337Updated this week
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆640Updated last month
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆607Updated 3 months ago
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,076Updated last week
• thackl / gggenomes
  A grammar of graphics for comparative genomics
  ☆689Updated 3 weeks ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆726Updated 2 weeks ago
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆601Updated 8 months ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆838Updated last week
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆581Updated 11 months ago
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,023Updated last week
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆520Updated last year
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆519Updated 4 months ago
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆466Updated this week
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆507Updated 8 months ago
• hbctraining / DGE_workshop
  ☆392Updated 3 years ago
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆866Updated 5 months ago
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆518Updated last week
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,480Updated 2 months ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,019Updated 3 years ago
• ablab / spades
  SPAdes Genome Assembler
  ☆853Updated this week
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆919Updated last year
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆857Updated 3 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆426Updated 7 months ago
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆811Updated last week
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆466Updated 2 months ago
• pachterlab / kallisto
  Near-optimal RNA-Seq quantification
  ☆693Updated 3 months ago