cmdcolin / awesome-genome-visualizationLinks
A list of interesting genome browser and genome visualization programs
☆1,042Updated last week
Alternatives and similar repositories for awesome-genome-visualization
Users that are interested in awesome-genome-visualization are comparing it to the libraries listed below
Sorting:
- python module to plot beautiful and highly customizable genome browser tracks☆857Updated last year
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,177Updated last week
- Phylogenetic orthology inference for comparative genomics☆822Updated 5 months ago
- Bioinformatics code libraries and scripts☆552Updated 5 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,053Updated 5 months ago
- Bioinformatics one liners from Ming Tang☆500Updated 5 years ago
- Fast genome-wide functional annotation through orthology assignment☆682Updated 6 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,400Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆882Updated last week
- A grammar of graphics for comparative genomics☆736Updated last month
- Gene cluster comparison figure generator☆627Updated last week
- A list of useful bioinformatics resources☆619Updated 8 months ago
- A quality control analysis tool for high throughput sequencing data☆561Updated 2 weeks ago
- A tool to find sequencing data and metadata from public databases.☆591Updated last year
- Toolkit for processing sequences in FASTA/Q formats☆1,519Updated 6 months ago
- RNAseq analysis notes from Ming Tang☆1,058Updated 4 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆536Updated 3 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆529Updated last week
- MACS -- Model-based Analysis of ChIP-Seq☆763Updated last month
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆549Updated last week
- Graph-based alignment (Hierarchical Graph FM index)☆518Updated 3 months ago
- Tools to process and analyze deep sequencing data.☆750Updated 5 months ago
- ChIP-seq analysis notes from Ming Tang☆836Updated last year
- ☆406Updated 3 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆884Updated 7 months ago
- Rapid prokaryotic genome annotation☆944Updated 2 weeks ago
- Near-optimal RNA-Seq quantification☆712Updated last month
- Trinity RNA-Seq de novo transcriptome assembly☆879Updated 10 months ago
- SPAdes Genome Assembler☆886Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆492Updated last week