cmdcolin / awesome-genome-visualizationLinks
A list of interesting genome browser and genome visualization programs
☆999Updated 2 weeks ago
Alternatives and similar repositories for awesome-genome-visualization
Users that are interested in awesome-genome-visualization are comparing it to the libraries listed below
Sorting:
- python module to plot beautiful and highly customizable genome browser tracks☆835Updated last year
- Phylogenetic orthology inference for comparative genomics☆789Updated last month
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,087Updated this week
- Bioinformatics one liners from Ming Tang☆490Updated 4 years ago
- Bioinformatics code libraries and scripts☆542Updated last month
- A list of useful bioinformatics resources☆612Updated 3 months ago
- Fast genome-wide functional annotation through orthology assignment☆645Updated 2 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,026Updated 3 weeks ago
- Tools to process and analyze deep sequencing data.☆734Updated last month
- A quality control analysis tool for high throughput sequencing data☆526Updated 2 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆846Updated this week
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆468Updated this week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆523Updated 5 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆509Updated 9 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,484Updated 2 months ago
- Gene cluster comparison figure generator☆604Updated 9 months ago
- A grammar of graphics for comparative genomics☆693Updated last month
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆522Updated 3 weeks ago
- A tool to find sequencing data and metadata from public databases.☆584Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆753Updated 3 weeks ago
- ☆394Updated 3 years ago
- RNAseq analysis notes from Ming Tang☆1,030Updated 3 years ago
- Rapid prokaryotic genome annotation☆926Updated last year
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,349Updated this week
- The second version of the Kraken taxonomic sequence classification system☆815Updated last month
- ChIP-seq analysis notes from Ming Tang☆815Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆862Updated 3 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆866Updated 6 months ago
- SPAdes Genome Assembler☆860Updated this week
- A repository for setting up a RNAseq workflow☆440Updated 8 years ago