seqeralabs / wave-showcaseLinks
Examples showing how to configure Nextflow to run with Wave containers provisioning service
☆21Updated 8 months ago
Alternatives and similar repositories for wave-showcase
Users that are interested in wave-showcase are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated 11 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆39Updated last year
- A VSCode extension pack for nf-core developers.☆15Updated 4 months ago
- Testing building mulled containers for multi-requirement tools.☆76Updated this week
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- Demultiplexing pipeline for sequencing data☆47Updated this week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆76Updated this week
- Grep for FASTQ files☆98Updated 3 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆31Updated last week
- Tips for Nextflow and cheatsheet for channel operation☆78Updated 11 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated last week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆44Updated last week
- Reference genome resource manager☆76Updated last year
- An efficient CLI to extract sequences from the SRA☆108Updated 3 weeks ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- BigWig and BAM utilities☆96Updated last year
- A catalogue of available long read sequencing data analysis tools☆78Updated 4 months ago
- gatk4 RNA variant calling pipeline☆50Updated last week
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆113Updated 7 months ago
- ☆30Updated 2 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- A collection of modules and sub-workflows for Nextflow☆27Updated last week
- Experimental features for Nextflow☆43Updated 3 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- ☆42Updated 3 weeks ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated 3 months ago
- A proof of concept daisy-chaining Nextflow workflows☆26Updated 2 months ago