Examples showing how to configure Nextflow to run with Wave containers provisioning service
☆21Nov 2, 2024Updated last year
Alternatives and similar repositories for wave-showcase
Users that are interested in wave-showcase are comparing it to the libraries listed below
Sorting:
- Command line tool for Wave containers provisioning service☆19Dec 17, 2025Updated 2 months ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Dec 1, 2025Updated 3 months ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated 11 months ago
- Simple test framework for Nextflow pipelines☆177Feb 13, 2026Updated 2 weeks ago
- A GitHub action to install Nextflow☆26Feb 24, 2026Updated last week
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- a place for GA4GH-related wiki pages☆16Aug 3, 2017Updated 8 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 13, 2024Updated last year
- Code and files for the main nf-core website.☆85Updated this week
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 4 years ago
- ☆10Feb 21, 2020Updated 6 years ago
- Nextflow Tower CLI tool☆52Updated this week
- ☆15Apr 2, 2025Updated 11 months ago
- nf-test utility functions☆12Feb 13, 2026Updated 2 weeks ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 6 months ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- ☆17Feb 9, 2020Updated 6 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 7 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆14Apr 10, 2025Updated 10 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated last year
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated last month
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Fast FASTQ sample demultiplexing in Rust.☆67Feb 4, 2026Updated 3 weeks ago
- Nextflow language support for Visual Studio Editor☆37Feb 16, 2026Updated 2 weeks ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated last year
- Nextflow runs monitoring and organisation UI☆77Sep 20, 2024Updated last year
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆48May 26, 2025Updated 9 months ago
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 3 months ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆17Jun 3, 2025Updated 9 months ago
- A best practices guide for Nextflow on Kubernetes☆21Nov 8, 2023Updated 2 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- A proof of concept of RNAseq pipeline☆84Jan 23, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Dec 3, 2025Updated 3 months ago
- SQL support plugin for Nextflow☆32Sep 15, 2025Updated 5 months ago