maxdoblas / QuickEd
QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.
☆23Updated last month
Related projects ⓘ
Alternatives and complementary repositories for QuickEd
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 2 years ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- implicit pangenome graph☆44Updated 2 weeks ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 6 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆18Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 3 months ago
- Differential k-mer analysis☆33Updated 9 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- ☆12Updated 7 months ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Snakemake pipeline for benchmarking read mappers☆16Updated 11 months ago
- Kmer Analysis of Pileups for Genotyping☆19Updated last week
- ☆21Updated last month
- A long-read analysis toolbox for cancer and population genomics☆20Updated 8 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 5 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆18Updated 3 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last month
- Efficient low-divergence mapping of long reads in minimizer space☆63Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆26Updated 3 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆42Updated 4 months ago
- Statistics and analysis for variation graphs☆31Updated this week
- VNTR annotation using motif selection☆29Updated last month