uclahs-cds / tool-NFTest
CLI to automate Nextflow pipeline testing
☆12Updated 2 months ago
Alternatives and similar repositories for tool-NFTest
Users that are interested in tool-NFTest are comparing it to the libraries listed below
Sorting:
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- ☆9Updated 3 years ago
- A pipeline creation tool using Snakemake☆11Updated this week
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆11Updated 2 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Toolkit for calling and analyzing de novo STR mutations☆13Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆12Updated 3 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Updated 5 months ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 9 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆10Updated 5 months ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Detects human contamination in bam files☆16Updated 4 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- k-mer similarity analysis pipeline☆21Updated last week
- Benchmark structural variant calls against a reference set☆17Updated 6 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 5 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Two pass alignment for long reads☆22Updated 4 years ago
- A nextflow pipeline for calling exome CNVs☆9Updated this week
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago