CLI to automate Nextflow pipeline testing
☆13Dec 15, 2025Updated 8 months ago
Alternatives and similar repositories for tool-NFTest
Users that are interested in tool-NFTest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 5 months ago
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- TQSLE v1.0 released☆10Aug 29, 2023Updated 3 years ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year
- ☆13Sep 24, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- A pipeline creation tool using Snakemake☆14Aug 26, 2026Updated last week
- Structural Variant Prediction Viewer☆36Jul 19, 2017Updated 9 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Genotyping of paralog specific gene types☆22Updated this week
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆23Jan 3, 2025Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- Analysis and visualization of RNA-Seq results☆34Aug 25, 2026Updated last week
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 10 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Generic human DNA variant annotation pipeline☆60Aug 11, 2026Updated 3 weeks ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- ☆13Sep 5, 2017Updated 8 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.☆10Apr 9, 2018Updated 8 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- Workflow to identify the centromere dip regions (CDR) from methyl BAMs☆16Jun 4, 2025Updated last year
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 9 months ago
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 3 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆61May 23, 2019Updated 7 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SQL-like query language for the SAM/BAM file format☆30Sep 20, 2023Updated 2 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Interactive multiscale visualization for structural variation in human genomes☆73Jul 21, 2026Updated last month
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 9 months ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago