MBaysanLab / vcf-observerLinks
VCF Observer is a VCF file analysis, comparison, and visualization tool.
☆18Updated 8 months ago
Alternatives and similar repositories for vcf-observer
Users that are interested in vcf-observer are comparing it to the libraries listed below
Sorting:
- Toolkit to convert the output of common variant calling programs to VCF☆23Updated 2 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- ☆38Updated 3 months ago
- ☆26Updated 6 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆96Updated last week
- The PanGenome Graph Builder☆16Updated last year
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- De novo clustering of long transcript reads into genes☆69Updated 4 months ago
- ☆19Updated 3 years ago
- ☆15Updated last year
- perSVade: personalized Structural Variation detection☆40Updated 2 weeks ago
- ☆64Updated 2 years ago
- A tool for simulating random mutations in any genome☆42Updated last year
- Pipeline for the identification of (coding) gene structures in draft genomes.☆30Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆82Updated last month
- MIRA sequence assembler☆28Updated 8 months ago
- AMBER: Assessment of Metagenome BinnERs☆31Updated 8 months ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated last week
- FastOMA is a scalable software package to infer orthology relationship.☆82Updated 2 weeks ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 5 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆78Updated 5 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆20Updated 3 weeks ago
- ☆36Updated this week
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆14Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆35Updated 4 months ago
- Ancient microbiome snakemake workflow☆25Updated 5 months ago
- Transformer-based sequence correction method for genome assembly polishing☆85Updated 6 months ago
- Workshop on Genomics - Genomics Adventure☆42Updated 3 months ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 10 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated last month