Alternatives and similar repositories for vcf-observer

Users that are interested in vcf-observer are comparing it to the libraries listed below

• MatteoSchiavinato / all2vcf
  Toolkit to convert the output of common variant calling programs to VCF
  ☆23Updated 2 years ago
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆35Updated 3 months ago
• pangenome / pggb-paper
  The PanGenome Graph Builder
  ☆16Updated last year
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆94Updated last month
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆30Updated last year
• epi2me-labs / wf-16s
  ☆34Updated 4 months ago
• cschin / peregrine-2021
  ☆59Updated last year
• NBISweden / aMeta
  Ancient microbiome snakemake workflow
  ☆26Updated 4 months ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆76Updated 5 months ago
• PacificBiosciences / pbAA
  ☆26Updated 6 months ago
• galaxyproject / KegAlign
  fork of the GPU genome aligner
  ☆18Updated 11 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆37Updated last week
• mcfrith / last-genome-alignments
  ☆64Updated 2 years ago
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆31Updated 2 months ago
• nf-cmgg / structural
  A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…
  ☆24Updated 2 weeks ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆80Updated 2 weeks ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last month
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆23Updated 2 months ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆20Updated last week
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• nanoporetech / DTR-phage-pipeline
  ☆16Updated last year
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated this week
• epi2me-labs / wf-amplicon
  ☆39Updated 4 months ago
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆68Updated 4 months ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆49Updated 5 months ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆54Updated last month
• epi2me-labs / wf-clone-validation
  ☆37Updated 2 months ago
• estebanpw / chromeister
  A dotplot generator for large chromosomes
  ☆42Updated last year