Alternatives and similar repositories for vcf-observer

Users that are interested in vcf-observer are comparing it to the libraries listed below

• MatteoSchiavinato / all2vcf
  Toolkit to convert the output of common variant calling programs to VCF
  ☆23Updated 3 years ago
• mcfrith / last-genome-alignments
  ☆71Updated 2 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆48Updated 5 years ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆26Updated this week
• nanoporetech / DTR-phage-pipeline
  ☆16Updated last year
• pauloluniyi / VGEA
  VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.
  ☆20Updated 4 years ago
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆102Updated 2 months ago
• galaxyproject / KegAlign
  fork of the GPU genome aligner
  ☆34Updated 2 weeks ago
• epi2me-labs / wf-clone-validation
  ☆39Updated last month
• vgteam / vg_wdl
  Workflow Description Language (WDL) scripts for common vg workflows
  ☆21Updated last month
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆36Updated 8 months ago
• PacificBiosciences / pbAA
  ☆27Updated last month
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆43Updated 2 years ago
• epi2me-labs / wf-16s
  ☆43Updated 2 weeks ago
• DrMicrobit / mira
  MIRA sequence assembler
  ☆31Updated last year
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆33Updated last month
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated this week
• epi2me-labs / wf-amplicon
  ☆41Updated last month
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆48Updated last month
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆40Updated last month
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆38Updated 2 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last month
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆90Updated 2 weeks ago
• NBISweden / aMeta
  Ancient microbiome snakemake workflow
  ☆27Updated 9 months ago
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆84Updated last year
• ncherric / Iliad
  ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
  ☆28Updated 2 years ago
• pangenome / pggb-paper
  The PanGenome Graph Builder
  ☆16Updated last year
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆82Updated 2 weeks ago
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆36Updated last year
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆99Updated this week