Intel lab's open sourced data science framework for accelerating digital biology
☆54Apr 9, 2026Updated 3 months ago
Alternatives and similar repositories for Open-Omics-Acceleration-Framework
Users that are interested in Open-Omics-Acceleration-Framework are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jul 25, 2025Updated 11 months ago
- ☆27Apr 5, 2026Updated 3 months ago
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 3 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Hidden Markov Model based Copy number caller☆20Updated this week
- Nextflow Tower CLI tool☆55Updated this week
- DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.☆14Jan 8, 2026Updated 6 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Nextflow pipelines to process long read ONT and/or pacbio HiFi data☆18Jun 19, 2026Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆58Jun 4, 2024Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Jul 3, 2026Updated 3 weeks ago
- ☆20Nov 17, 2025Updated 8 months ago
- Code available for the quantitative pharmacophores☆13Sep 7, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Alignment-free 3D molecular shape descriptors based on spectral and diffusion geometry. Provides tools for computing Laplace-Beltrami spe…☆11Jan 21, 2019Updated 7 years ago
- ☆40Jul 3, 2025Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆57Mar 7, 2025Updated last year
- ☆11Nov 17, 2020Updated 5 years ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 3 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Intel® Tensor Processing Primitives extension for Pytorch*☆19Jul 4, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bad link reporter for GitHub repositories☆13Mar 25, 2024Updated 2 years ago
- MolKGNN is a deep learning model for predicting biological activity or molecular properties. It features in 1. SE(3)-invariance 2. confor…☆14Jan 22, 2024Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- ☆28Mar 15, 2017Updated 9 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- Clusters protein chains based on CA distance difference☆18Updated this week
- Targeted genotyper for complex polymorphic genes☆43Updated this week
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆73Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- ☆12Apr 25, 2026Updated 2 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆138Jul 13, 2026Updated last week
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated last year