Intel lab's open sourced data science framework for accelerating digital biology
☆49Mar 18, 2026Updated last week
Alternatives and similar repositories for Open-Omics-Acceleration-Framework
Users that are interested in Open-Omics-Acceleration-Framework are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jul 25, 2025Updated 7 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- Nextflow Tower CLI tool☆53Updated this week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Jun 4, 2024Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Feb 10, 2026Updated last month
- ☆20Nov 17, 2025Updated 4 months ago
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- ☆39Jul 3, 2025Updated 8 months ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- Plot multiple sequence alignment (MSA)☆16Sep 23, 2024Updated last year
- ☆11Nov 17, 2020Updated 5 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 4 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated last year
- Bad link reporter for GitHub repositories☆13Mar 25, 2024Updated last year
- ☆28Mar 15, 2017Updated 9 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 6 months ago
- ☆11May 10, 2025Updated 10 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 9 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Interactive multiscale visualization for structural variation in human genomes☆72Mar 10, 2026Updated 2 weeks ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆134Mar 17, 2026Updated last week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated 9 months ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- ☆32Aug 2, 2022Updated 3 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 6 months ago