IntelLabs / Open-Omics-Acceleration-FrameworkLinks
Intel lab's open sourced data science framework for accelerating digital biology
☆47Updated last month
Alternatives and similar repositories for Open-Omics-Acceleration-Framework
Users that are interested in Open-Omics-Acceleration-Framework are comparing it to the libraries listed below
Sorting:
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆52Updated 3 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- ☆26Updated 3 months ago
- Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…☆74Updated last year
- A genome browser in your Jupyter notebook☆31Updated 3 weeks ago
- POSTRE: Prediction Of STRuctural variant Effects☆24Updated 3 months ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- ☆43Updated last week
- a minimal, scriptable genome browser for python☆51Updated 5 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated this week
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆11Updated 2 years ago
- Application for semi-automated genomic annotation.☆16Updated 10 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- ClinVar Mapping and Annotation Toolkit☆19Updated 2 weeks ago
- A python package for showing JBrowse views☆25Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆69Updated 2 weeks ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆36Updated 3 weeks ago
- Annotating principal splice isoforms☆14Updated 8 months ago
- Workflow management with Nextflow and nf-core☆25Updated 4 months ago
- ☆39Updated 8 months ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆20Updated 11 months ago
- ☆65Updated 3 months ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- A better, faster way to count guides in CRISPR screens.☆31Updated last month
- Python Primer Design Library☆13Updated last month
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 7 months ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated 2 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year